Variant report

Variant	rs56010356
Chromosome Location	chr10:23099656-23099657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23098595..23101084-chr2:58865453..58867756,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1317483	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16922719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16922724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16922727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600520	1.00[AMR][1000 genomes]
rs74121628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74121661	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894960	chr10:23049139-23113841	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv466833	chr10:23050683-23110797	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv894962	chr10:23050683-23113841	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv894963	chr10:23050683-23121820	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv894965	chr10:23071128-23113841	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv275133	chr10:23098092-23100287	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23093000-23105200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:23094800-23104400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:23094800-23105200	Weak transcription	Osteobl	bone
4	chr10:23095000-23099800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:23095000-23099800	Weak transcription	HSMM	muscle
6	chr10:23099400-23099800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr10:23099400-23100000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr10:23099400-23100200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr10:23099400-23100400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:23099400-23100400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr10:23099400-23100400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr10:23099400-23100400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr10:23099600-23099800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr10:23099600-23100000	Enhancers	NHLF	lung
15	chr10:23099600-23100200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:23099600-23100200	Enhancers	Hela-S3	cervix
17	chr10:23099600-23100200	Enhancers	NH-A	brain
18	chr10:23099600-23100400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:23099600-23100400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:23099600-23100400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
21	chr10:23099600-23100400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:23099600-23100400	Enhancers	NHDF-Ad	bronchial

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