Variant report

Variant	rs560117630
Chromosome Location	chr2:173160641-173160642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:173160607..173162129-chr6:26033215..26035045,5	MCF-7	breast:
2	chr2:173156581..173161480-chr2:173162847..173166156,5	MCF-7	breast:
3	chr2:173160107..173161108-chr6:26033351..26034011,4	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000137259	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3034	chr2:173160295-173200113	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173151400-173168000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:173153600-173160800	Weak transcription	Right Atrium	heart
3	chr2:173158000-173160800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr2:173158200-173160800	Enhancers	Pancreas	Pancrea
5	chr2:173158600-173161000	Enhancers	Stomach Mucosa	stomach
6	chr2:173159200-173160800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:173159200-173162200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:173159200-173162200	Weak transcription	Ovary	ovary
9	chr2:173159200-173164400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr2:173159200-173164600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:173159400-173161400	Weak transcription	Osteobl	bone
12	chr2:173159400-173164200	Weak transcription	HMEC	breast
13	chr2:173160400-173160800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
14	chr2:173160400-173160800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr2:173160400-173161000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr2:173160400-173161000	Enhancers	Right Ventricle	heart
17	chr2:173160400-173161800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
18	chr2:173160400-173162400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
19	chr2:173160400-173162600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr2:173160400-173162800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
21	chr2:173160600-173160800	Enhancers	Esophagus	oesophagus
22	chr2:173160600-173161000	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
23	chr2:173160600-173161000	Bivalent Enhancer	Fetal Heart	heart
24	chr2:173160600-173161200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
25	chr2:173160600-173161400	Enhancers	Left Ventricle	heart
26	chr2:173160600-173161600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr2:173160600-173161800	Enhancers	NHEK	skin
28	chr2:173160600-173162000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr2:173160600-173162200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
30	chr2:173160600-173162200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr2:173160600-173162400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr2:173160600-173162600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
33	chr2:173160600-173162600	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr2:173160600-173162600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr2:173160600-173163200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

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