Variant report

Variant	rs56012628
Chromosome Location	chr1:78660853-78660854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12080776	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56072252	1.00[AMR][1000 genomes]
rs56140793	1.00[AMR][1000 genomes]
rs56688871	1.00[AMR][1000 genomes]
rs57296382	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57557763	1.00[AMR][1000 genomes]
rs57731556	1.00[AMR][1000 genomes]
rs58472854	1.00[AMR][1000 genomes]
rs58770363	1.00[AMR][1000 genomes]
rs59041117	1.00[AMR][1000 genomes]
rs59440121	1.00[AMR][1000 genomes]
rs60080500	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61626032	1.00[AMR][1000 genomes]
rs6660974	1.00[AMR][1000 genomes]
rs6673518	1.00[AMR][1000 genomes]
rs6689686	1.00[AMR][1000 genomes]
rs74093219	1.00[AMR][1000 genomes]
rs74093243	1.00[AMR][1000 genomes]
rs74093248	1.00[AMR][1000 genomes]
rs74093250	1.00[AMR][1000 genomes]
rs74093259	1.00[AMR][1000 genomes]
rs74093266	1.00[AMR][1000 genomes]
rs74093268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74093269	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013008	chr1:78463173-78958701	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv535012	chr1:78463173-78958701	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv1000388	chr1:78638946-78665285	Enhancers Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
5	nsv1544	chr1:78648491-78660972	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	nsv546600	chr1:78649862-78666990	Active TSS Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78656600-78668800	Weak transcription	Liver	Liver
2	chr1:78657600-78667200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr1:78657600-78669600	Weak transcription	Pancreas	Pancrea
4	chr1:78659400-78668000	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links