Variant report

Variant	rs560132608
Chromosome Location	chr9:93683350-93683351
allele	-/TG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:93681178..93683556-chr9:93684318..93687198,2	MCF-7	breast:
2	chr9:93683300..93685317-chr9:93705427..93707006,2	MCF-7	breast:
3	chr9:93682025..93684983-chr9:93787806..93789762,2	MCF-7	breast:
4	chr9:93677459..93679335-chr9:93682010..93683558,2	MCF-7	breast:
5	chr9:93683207..93685388-chr9:94184914..94187994,3	MCF-7	breast:
6	chr9:93682204..93686521-chr9:93708730..93712212,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165030	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1038685	chr9:93556174-93685729	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1039326	chr9:93598856-93685729	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv3437897	chr9:93680731-93685229	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv3370710	chr9:93682749-93683380	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93658800-93683400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:93681400-93683400	Enhancers	Aorta	Aorta
3	chr9:93681400-93686800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:93681400-93687200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr9:93681600-93683800	Enhancers	Right Atrium	heart
6	chr9:93681600-93684000	Enhancers	Esophagus	oesophagus
7	chr9:93682200-93683400	Enhancers	Brain Germinal Matrix	brain
8	chr9:93682200-93684000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:93682200-93684000	Enhancers	Fetal Stomach	stomach
10	chr9:93682200-93684200	Enhancers	Adipose Nuclei	Adipose
11	chr9:93682400-93683600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr9:93682400-93684000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:93682400-93684000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:93682400-93684800	Enhancers	Pancreas	Pancrea
15	chr9:93682600-93683600	Weak transcription	Fetal Muscle Leg	muscle
16	chr9:93682600-93683800	Enhancers	Brain Anterior Caudate	brain
17	chr9:93682600-93683800	Enhancers	Fetal Lung	lung
18	chr9:93682600-93684600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:93682800-93683400	Flanking Active TSS	Fetal Heart	heart
20	chr9:93683000-93684000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr9:93683000-93692000	Weak transcription	Right Ventricle	heart
22	chr9:93683200-93683400	Flanking Active TSS	Stomach Smooth Muscle	stomach
23	chr9:93683200-93683600	Flanking Active TSS	HMEC	breast
24	chr9:93683200-93683600	Flanking Active TSS	NHEK	skin
25	chr9:93683200-93683800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:93683200-93683800	Enhancers	Fetal Brain Male	brain
27	chr9:93683200-93684000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr9:93683200-93684000	Enhancers	Muscle Satellite Cultured Cells	--
29	chr9:93683200-93684000	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr9:93683200-93684000	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links