Variant report

Variant	rs560133503
Chromosome Location	chr4:86958768-86958769
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86728075..86730663-chr4:86957838..86959662,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86916800-86985400	Weak transcription	Ovary	ovary
2	chr4:86936000-86975600	Weak transcription	Brain Germinal Matrix	brain
3	chr4:86936400-86990600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:86944600-86963000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:86945400-86963200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:86948200-86966600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:86949200-86988600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:86950600-86959200	Weak transcription	Fetal Brain Male	brain
9	chr4:86950600-86967000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:86953800-86959600	Enhancers	HUVEC	blood vessel
11	chr4:86954600-86959000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr4:86954600-86960400	Weak transcription	Pancreas	Pancrea
13	chr4:86954600-86960600	Weak transcription	Left Ventricle	heart
14	chr4:86954800-86959000	Weak transcription	Fetal Lung	lung
15	chr4:86954800-86960400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:86955000-86959200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr4:86955000-86960400	Weak transcription	Fetal Stomach	stomach
18	chr4:86955000-86964400	Weak transcription	Brain Anterior Caudate	brain
19	chr4:86955000-86966400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr4:86955000-86985000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr4:86955200-86960200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr4:86955200-86962600	Weak transcription	Aorta	Aorta
23	chr4:86955200-86964400	Weak transcription	Brain Substantia Nigra	brain
24	chr4:86955200-86964800	Weak transcription	Brain Angular Gyrus	brain
25	chr4:86955200-86965000	Weak transcription	Right Atrium	heart
26	chr4:86955200-86966600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr4:86955200-86971000	Weak transcription	Brain Hippocampus Middle	brain
28	chr4:86955200-87003800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr4:86955600-86963000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr4:86956200-86969600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr4:86956600-86958800	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr4:86956800-86960000	Enhancers	Fetal Heart	heart
33	chr4:86958000-86959200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr4:86958200-86959000	Weak transcription	HSMMtube	muscle
35	chr4:86958200-86959200	Weak transcription	Primary T cells from cord blood	blood
36	chr4:86958200-86975600	Weak transcription	Fetal Brain Female	brain
37	chr4:86958400-86959000	Enhancers	NH-A	brain
38	chr4:86958400-86959400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr4:86958400-86992600	Weak transcription	Fetal Kidney	kidney
40	chr4:86958600-86965200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links