Variant report

Variant rs56013776
Chromosome Location chr5:52300197-52300198
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:52286200-52300400 Weak transcription Gastric stomach
2 chr5:52286200-52303400 Weak transcription Small Intestine intestine
3 chr5:52286200-52313600 Weak transcription Lung lung
4 chr5:52286600-52302400 Weak transcription Fetal Stomach stomach
5 chr5:52289200-52311600 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr5:52292400-52301000 Weak transcription Spleen Spleen
7 chr5:52292400-52303200 Weak transcription Rectal Smooth Muscle rectum
8 chr5:52293600-52304000 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr5:52293800-52313400 Weak transcription Fetal Intestine Small intestine
10 chr5:52294200-52301200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr5:52294600-52302400 Weak transcription Cortex derived primary cultured neurospheres brain
12 chr5:52294600-52302600 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr5:52294600-52302800 Weak transcription Stomach Smooth Muscle stomach
14 chr5:52295800-52300200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
15 chr5:52295800-52303000 Weak transcription Brain Anterior Caudate brain
16 chr5:52296000-52300200 Weak transcription Osteobl bone
17 chr5:52297600-52300200 Weak transcription NHLF lung
18 chr5:52297600-52301000 Strong transcription Hela-S3 cervix
19 chr5:52297600-52301600 Weak transcription Brain Angular Gyrus brain
20 chr5:52297600-52301600 Weak transcription Brain Cingulate Gyrus brain
21 chr5:52297800-52301600 Weak transcription Brain Substantia Nigra brain
22 chr5:52298400-52301600 Genic enhancers Breast Myoepithelial Primary Cells Breast
23 chr5:52298400-52301800 Genic enhancers NHEK skin
24 chr5:52298800-52300200 Strong transcription Fetal Intestine Large intestine
25 chr5:52298800-52301400 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr5:52298800-52302800 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr5:52298800-52303400 Enhancers Dnd41 blood
28 chr5:52299000-52300600 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
29 chr5:52299000-52302000 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr5:52299000-52302400 Genic enhancers HMEC breast
31 chr5:52299000-52304800 Genic enhancers HepG2 liver
32 chr5:52299200-52302000 Enhancers Muscle Satellite Cultured Cells --
33 chr5:52299200-52302800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr5:52299400-52300200 Strong transcription Duodenum Mucosa Duodenum
35 chr5:52299400-52300600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
36 chr5:52299400-52313400 Weak transcription Esophagus oesophagus
37 chr5:52299600-52300600 Enhancers HUVEC blood vessel
38 chr5:52299800-52300200 Strong transcription Brain Hippocampus Middle brain
39 chr5:52299800-52300200 Genic enhancers A549 lung
40 chr5:52299800-52301400 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
41 chr5:52299800-52301800 Enhancers NHDF-Ad bronchial
42 chr5:52299800-52302000 Enhancers NH-A brain
43 chr5:52299800-52305000 Enhancers Fetal Adrenal Gland Adrenal Gland
44 chr5:52299800-52306000 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
45 chr5:52300000-52302000 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
46 chr5:52300000-52302600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --

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