Variant report

Variant	rs56015424
Chromosome Location	chr14:55886874-55886875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55877783..55881962-chr14:55882620..55887567,10	MCF-7	breast:
2	chr14:55877415..55882128-chr14:55883755..55887346,6	K562	blood:
3	chr14:55737206..55739469-chr14:55885262..55887168,2	K562	blood:

Variant related genes	Relation type
ENSG00000178974	Chromatin interaction
ENSG00000258413	Chromatin interaction
ENSG00000126775	Chromatin interaction
ENSG00000239199	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10134905	0.85[EUR][1000 genomes]
rs10137395	0.83[EUR][1000 genomes]
rs10144034	0.85[EUR][1000 genomes]
rs10144130	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10150596	0.85[EUR][1000 genomes]
rs10150617	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10782426	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11627790	0.82[EUR][1000 genomes]
rs11845228	0.86[EUR][1000 genomes]
rs12431542	0.84[EUR][1000 genomes]
rs12887653	0.87[EUR][1000 genomes]
rs12888181	0.89[EUR][1000 genomes]
rs12888234	0.84[EUR][1000 genomes]
rs12888361	0.89[EUR][1000 genomes]
rs12893964	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1572613	0.88[EUR][1000 genomes]
rs2152975	0.86[EUR][1000 genomes]
rs2152976	0.88[EUR][1000 genomes]
rs2185036	0.87[EUR][1000 genomes]
rs28478984	0.84[EUR][1000 genomes]
rs34652660	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4243600	0.87[EUR][1000 genomes]
rs4898865	0.85[EUR][1000 genomes]
rs4901562	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4901563	0.87[EUR][1000 genomes]
rs4901564	0.85[EUR][1000 genomes]
rs4901565	0.84[EUR][1000 genomes]
rs4901567	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4901568	0.85[EUR][1000 genomes]
rs4901570	0.85[EUR][1000 genomes]
rs61976569	0.81[EUR][1000 genomes]
rs61976570	0.86[EUR][1000 genomes]
rs61976571	0.88[EUR][1000 genomes]
rs6573028	0.84[EUR][1000 genomes]
rs6573029	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6573031	0.85[EUR][1000 genomes]
rs6573032	0.85[EUR][1000 genomes]
rs713477	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7142204	0.88[EUR][1000 genomes]
rs7146170	0.85[EUR][1000 genomes]
rs7146269	0.85[EUR][1000 genomes]
rs7146306	0.85[EUR][1000 genomes]
rs7146472	0.86[EUR][1000 genomes]
rs7147415	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7147968	0.88[EUR][1000 genomes]
rs7148481	0.88[EUR][1000 genomes]
rs7149622	0.88[EUR][1000 genomes]
rs72717779	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8009706	0.85[EUR][1000 genomes]
rs8010013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8014526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8014621	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8020152	0.87[EUR][1000 genomes]
rs9635231	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901958	chr14:55822095-56045411	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv901959	chr14:55853724-55916225	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	n/a
3	nsv901960	chr14:55853724-56085130	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv901961	chr14:55853724-56101879	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv901962	chr14:55862956-56101879	Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv901963	chr14:55871452-56085130	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv901964	chr14:55871452-56101879	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
8	nsv564874	chr14:55879685-56027815	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55884400-55890200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr14:55885000-55890200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr14:55885400-55889400	Weak transcription	Left Ventricle	heart
4	chr14:55885400-55890200	Weak transcription	Stomach Mucosa	stomach
5	chr14:55885400-55891600	Weak transcription	Right Ventricle	heart
6	chr14:55886000-55890200	Weak transcription	K562	blood
7	chr14:55886400-55890400	Weak transcription	Fetal Heart	heart

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