Variant report

Variant	rs560155866
Chromosome Location	chr5:93228907-93228908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:93222617..93225067-chr5:93227445..93229131,2	K562	blood:
2	chr5:93227743..93229810-chr5:93246414..93248576,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1033466	chr5:93201089-93250608	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1028893	chr5:93213264-93276883	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1020849	chr5:93228065-93279216	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93181400-93231200	Weak transcription	Adipose Nuclei	Adipose
2	chr5:93194200-93307600	Weak transcription	Left Ventricle	heart
3	chr5:93194400-93232800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr5:93210400-93232200	Weak transcription	Primary T cells from cord blood	blood
5	chr5:93213000-93256400	Weak transcription	Primary B cells from cord blood	blood
6	chr5:93216600-93232000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:93218000-93230000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr5:93223000-93229000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:93223000-93230200	Weak transcription	Ovary	ovary
10	chr5:93226000-93229200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr5:93226200-93229200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr5:93226400-93229200	Enhancers	Brain Germinal Matrix	brain
13	chr5:93226600-93229400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:93226800-93238000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr5:93226800-93269600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr5:93227600-93229200	Enhancers	Fetal Brain Female	brain
17	chr5:93227800-93229000	Weak transcription	Fetal Kidney	kidney
18	chr5:93227800-93230200	Weak transcription	Brain Substantia Nigra	brain
19	chr5:93228000-93230200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:93228000-93230200	Weak transcription	Brain Hippocampus Middle	brain
21	chr5:93228000-93266600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr5:93228200-93229200	Enhancers	Fetal Brain Male	brain
23	chr5:93228200-93230600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr5:93228200-93231200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr5:93228400-93229200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr5:93228600-93230400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr5:93228600-93230800	Weak transcription	HSMMtube	muscle
28	chr5:93228800-93229000	Weak transcription	Gastric	stomach
29	chr5:93228800-93229000	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr5:93228800-93229200	Enhancers	Psoas Muscle	Psoas

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