Variant report

Variant	rs560157987
Chromosome Location	chr7:65679200-65679201
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761079	chr7:65092426-65689733	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
3	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
4	nsv1028692	chr7:65673136-65751069	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv538908	chr7:65673136-65751069	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv3389228	chr7:65679117-65681065	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65671600-65685400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:65671600-65689000	Weak transcription	Pancreas	Pancrea
3	chr7:65671800-65682200	Weak transcription	Left Ventricle	heart
4	chr7:65672200-65687400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:65672200-65723400	Weak transcription	Right Atrium	heart
6	chr7:65672600-65687600	Weak transcription	Brain Germinal Matrix	brain
7	chr7:65673000-65689000	Weak transcription	HMEC	breast
8	chr7:65673400-65689000	Weak transcription	Brain Hippocampus Middle	brain
9	chr7:65673600-65682800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:65674000-65688800	Weak transcription	Ovary	ovary
11	chr7:65675600-65685400	Weak transcription	Esophagus	oesophagus
12	chr7:65675800-65679200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr7:65676000-65681000	Weak transcription	Liver	Liver
14	chr7:65676000-65684400	Weak transcription	HepG2	liver
15	chr7:65676000-65689000	Weak transcription	Lung	lung
16	chr7:65676000-65696200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr7:65676000-65716800	Weak transcription	Primary B cells from cord blood	blood
18	chr7:65676200-65696200	Weak transcription	Fetal Stomach	stomach
19	chr7:65676400-65679200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:65676400-65679200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:65676400-65679200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr7:65676400-65679200	Enhancers	Osteobl	bone
23	chr7:65676600-65691200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:65676600-65693200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr7:65676800-65685400	Weak transcription	Gastric	stomach
26	chr7:65677000-65694600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:65677200-65693800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr7:65677800-65688800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr7:65678000-65679200	Enhancers	HSMM	muscle
30	chr7:65678000-65679200	Enhancers	NHDF-Ad	bronchial
31	chr7:65678400-65679800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr7:65678600-65679200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr7:65678800-65679200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr7:65678800-65679200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr7:65678800-65679200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr7:65678800-65679200	Enhancers	NH-A	brain
37	chr7:65678800-65679200	Enhancers	NHEK	skin
38	chr7:65679000-65683600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr7:65679200-65681600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr7:65679200-65684200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr7:65679200-65685400	Weak transcription	NHDF-Ad	bronchial
42	chr7:65679200-65686200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr7:65679200-65686200	Weak transcription	Osteobl	bone
44	chr7:65679200-65686600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr7:65679200-65686600	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr7:65679200-65687600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr7:65679200-65688600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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