Variant report

Variant	rs56016176
Chromosome Location	chr12:68417131-68417132
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs55637283	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55853686	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3411149	chr12:68066948-68435533	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68398400-68422200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr12:68406000-68425200	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr12:68406400-68426000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr12:68411400-68418600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr12:68416200-68421600	Weak transcription	Primary B cells from cord blood	blood
6	chr12:68416200-68425400	Weak transcription	Primary T cells from cord blood	blood
7	chr12:68416400-68418400	Weak transcription	Left Ventricle	heart
8	chr12:68416800-68426000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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