Variant report

Variant	rs560164186
Chromosome Location	chr6:44385946-44385947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44382268..44386801-chr6:44387364..44390498,4	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019145	chr6:44313576-44421440	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv885858	chr6:44385441-44421240	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv885859	chr6:44385441-44422466	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv517370	chr6:44385441-44422689	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44356400-44393800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:44357600-44388200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:44358000-44386000	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:44358400-44386000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:44358400-44403800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:44359400-44386000	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr6:44368400-44386000	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:44371600-44386000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:44374600-44388400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:44376800-44398200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:44376800-44424400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:44378200-44387800	Weak transcription	Fetal Heart	heart
13	chr6:44378400-44387200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:44379000-44386000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:44382000-44387200	Weak transcription	Esophagus	oesophagus
16	chr6:44383000-44386000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:44384000-44386000	Strong transcription	Primary B cells from peripheral blood	blood
18	chr6:44384000-44387000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:44384000-44387200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:44384200-44386000	Strong transcription	Fetal Thymus	thymus
21	chr6:44384200-44397600	Weak transcription	Small Intestine	intestine
22	chr6:44384400-44386000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:44384400-44387000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:44384400-44387200	Weak transcription	Ovary	ovary
25	chr6:44384600-44386000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:44384600-44396400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:44385000-44386000	Strong transcription	Hela-S3	cervix
28	chr6:44385000-44389600	Weak transcription	Stomach Mucosa	stomach
29	chr6:44385000-44392800	Weak transcription	Right Ventricle	heart
30	chr6:44385000-44397600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:44385200-44386000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr6:44385200-44387000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:44385200-44387000	Weak transcription	Colonic Mucosa	Colon
34	chr6:44385200-44387000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr6:44385200-44387200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr6:44385200-44387200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr6:44385200-44387200	Weak transcription	Colon Smooth Muscle	Colon
38	chr6:44385200-44387400	Weak transcription	Fetal Intestine Small	intestine
39	chr6:44385200-44387800	Weak transcription	Lung	lung
40	chr6:44385200-44388200	Weak transcription	Psoas Muscle	Psoas
41	chr6:44385200-44403200	Weak transcription	Gastric	stomach
42	chr6:44385400-44387000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:44385400-44387000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:44385400-44387000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr6:44385400-44387000	Weak transcription	Brain Substantia Nigra	brain
46	chr6:44385400-44387000	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr6:44385400-44387000	Weak transcription	HSMMtube	muscle
48	chr6:44385400-44387200	Weak transcription	NHLF	lung
49	chr6:44385400-44387400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr6:44385400-44390000	Weak transcription	Fetal Kidney	kidney

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