Variant report

Variant	rs56016880
Chromosome Location	chr7:79614662-79614663
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10259572	0.87[EUR][1000 genomes]
rs11983179	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56150062	1.00[EUR][1000 genomes]
rs62461683	0.86[EUR][1000 genomes]
rs62461684	0.86[EUR][1000 genomes]
rs6466880	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6466884	0.87[EUR][1000 genomes]
rs6946783	0.89[EUR][1000 genomes]
rs763822	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7811115	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888522	chr7:79402551-79619012	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032480	chr7:79558011-79625086	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79610000-79617200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:79612000-79615400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr7:79612000-79618000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:79612200-79615400	Enhancers	Osteobl	bone
5	chr7:79612400-79615000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:79613000-79615000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:79613000-79615400	Enhancers	NHDF-Ad	bronchial
8	chr7:79614000-79618000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:79614200-79615000	Weak transcription	NHLF	lung
10	chr7:79614600-79615000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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