Variant report

Variant	rs56019810
Chromosome Location	chr2:212330398-212330399
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16846219	0.87[AFR][1000 genomes]
rs17334585	0.92[EUR][1000 genomes]
rs17803759	0.84[EUR][1000 genomes]
rs17803801	0.84[EUR][1000 genomes]
rs55654205	0.92[EUR][1000 genomes]
rs55951500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875778	chr2:212297838-212360994	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv460067	chr2:212313400-212378242	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv584317	chr2:212313400-212378242	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2753335	chr2:212322858-212424019	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212320400-212332800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:212324400-212330600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:212328400-212330400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr2:212328600-212333800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:212328800-212330400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:212328800-212332800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr2:212328800-212333000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr2:212328800-212333600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr2:212328800-212333800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr2:212329000-212333000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr2:212329800-212331000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr2:212329800-212331400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:212330200-212331000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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