Variant report

Variant	rs560204100
Chromosome Location	chr6:113852157-113852158
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BHLHE40	chr6:113852021-113852297	HepG2	liver:	n/a	n/a
2	NR2F2	chr6:113851952-113852369	MCF-7	breast:	n/a	n/a
3	FOSL2	chr6:113852014-113852397	HepG2	liver:	n/a	chr6:113852185-113852196 chr6:113852186-113852195 chr6:113852184-113852196
4	MAX	chr6:113852065-113852329	NB4	blood:	n/a	chr6:113852159-113852169 chr6:113852253-113852262
5	MYC	chr6:113852090-113852172	MCF-7	breast:	n/a	chr6:113852159-113852169
6	GATA3	chr6:113851943-113852380	MCF-7	breast:	n/a	chr6:113852184-113852193
7	ARID3A	chr6:113852008-113852231	HepG2	liver:	n/a	n/a
8	MAX	chr6:113851932-113852340	SK-N-SH	brain:	n/a	chr6:113852159-113852169 chr6:113852253-113852262
9	MYC	chr6:113852139-113852163	H1-hESC	embryonic stem cell:	n/a	n/a
10	JUND	chr6:113852009-113852353	HepG2	liver:	n/a	chr6:113852186-113852195 chr6:113852184-113852196 chr6:113852184-113852195
11	MAFK	chr6:113852049-113852167	HepG2	liver:	n/a	n/a
12	MAFF	chr6:113852079-113852216	HepG2	liver:	n/a	n/a
13	MYC	chr6:113851858-113852409	MCF10A-Er-Src	breast:	n/a	chr6:113852159-113852169 chr6:113852253-113852262
14	MYC	chr6:113852059-113852220	MCF-7	breast:	n/a	chr6:113852159-113852169
15	STAT3	chr6:113852085-113852316	MCF10A-Er-Src	breast:	n/a	n/a
16	FOS	chr6:113851949-113852417	MCF10A-Er-Src	breast:	n/a	chr6:113852186-113852195 chr6:113852184-113852196 chr6:113852184-113852195
17	MXI1	chr6:113852021-113852268	HepG2	liver:	n/a	n/a
18	MAX	chr6:113851895-113852395	MCF-7	breast:	n/a	chr6:113852159-113852169 chr6:113852253-113852262
19	YY1	chr6:113852151-113852360	K562	blood:	n/a	n/a
20	POLR2A	chr6:113851991-113852191	MCF10A-Er-Src	breast:	n/a	n/a
21	MYC	chr6:113852011-113852301	MCF-7	breast:	n/a	chr6:113852159-113852169 chr6:113852253-113852262
22	MAX	chr6:113852026-113852308	SK-N-SH	brain:	n/a	chr6:113852159-113852169 chr6:113852253-113852262
23	NR2F2	chr6:113851958-113852336	MCF-7	breast:	n/a	n/a
24	CEBPB	chr6:113852071-113852292	HepG2	liver:	n/a	n/a
25	GATA3	chr6:113851738-113852446	MCF-7	breast:	n/a	chr6:113852184-113852193
26	E2F6	chr6:113851979-113852411	H1-hESC	embryonic stem cell:	n/a	n/a
27	MXI1	chr6:113851919-113852430	IMR90	lung:	n/a	n/a
28	E2F4	chr6:113852112-113852312	MCF10A-Er-Src	breast:	n/a	n/a
29	FOS	chr6:113852000-113852424	MCF10A-Er-Src	breast:	n/a	chr6:113852186-113852195 chr6:113852184-113852196 chr6:113852184-113852195
30	SMC3	chr6:113852044-113852255	HepG2	liver:	n/a	n/a
31	FOS	chr6:113852008-113852313	HUVEC	blood vessel:	n/a	chr6:113852186-113852195 chr6:113852184-113852196 chr6:113852184-113852195
32	MAX	chr6:113851941-113852366	H1-hESC	embryonic stem cell:	n/a	chr6:113852159-113852169 chr6:113852253-113852262
33	FOSL2	chr6:113851957-113852372	HepG2	liver:	n/a	chr6:113852185-113852196 chr6:113852186-113852195 chr6:113852184-113852196
34	FOSL2	chr6:113851950-113852313	SK-N-SH	brain:	n/a	chr6:113852185-113852196 chr6:113852186-113852195 chr6:113852184-113852196
35	MYC	chr6:113851850-113852413	MCF10A-Er-Src	breast:	n/a	chr6:113852159-113852169 chr6:113852253-113852262
36	SIN3AK20	chr6:113851873-113852441	MCF-7	breast:	n/a	n/a
37	FOSL2	chr6:113851919-113852315	A549	lung:	n/a	chr6:113852185-113852196 chr6:113852186-113852195 chr6:113852184-113852196
38	CEBPB	chr6:113852010-113852337	IMR90	lung:	n/a	n/a
39	POLR2A	chr6:113852045-113852255	MCF10A-Er-Src	breast:	n/a	n/a
40	MAX	chr6:113851831-113852349	MCF-7	breast:	n/a	chr6:113852159-113852169 chr6:113852253-113852262
41	MYC	chr6:113851985-113852329	K562	blood:	n/a	chr6:113852159-113852169 chr6:113852253-113852262
42	FOSL2	chr6:113851915-113852400	MCF-7	breast:	n/a	chr6:113852185-113852196 chr6:113852186-113852195 chr6:113852184-113852196
43	JUND	chr6:113851995-113852280	HepG2	liver:	n/a	chr6:113852186-113852195 chr6:113852184-113852196 chr6:113852184-113852195
44	FOS	chr6:113851956-113852384	MCF10A-Er-Src	breast:	n/a	chr6:113852186-113852195 chr6:113852184-113852196 chr6:113852184-113852195
45	MAX	chr6:113852029-113852314	K562	blood:	n/a	chr6:113852159-113852169 chr6:113852253-113852262
46	POLR2A	chr6:113852095-113852350	MCF-7	breast:	n/a	n/a
47	HNF4A	chr6:113851999-113852250	HepG2	liver:	n/a	n/a
48	YY1	chr6:113851951-113852560	H1-hESC	embryonic stem cell:	n/a	n/a
49	STAT3	chr6:113852076-113852306	MCF10A-Er-Src	breast:	n/a	n/a
50	MYBL2	chr6:113851839-113852322	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000236347	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv981078	chr6:113851437-113874497	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113849600-113852400	Enhancers	HMEC	breast
2	chr6:113850200-113852400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:113850200-113852400	Enhancers	NHDF-Ad	bronchial
4	chr6:113850200-113852600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:113851000-113852200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:113851400-113852800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:113851600-113852200	Enhancers	NHEK	skin
8	chr6:113851800-113852200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:113851800-113852400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:113852000-113852200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:113852000-113852200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:113852000-113852200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:113852000-113852200	Enhancers	NHLF	lung
14	chr6:113852000-113852400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr6:113852000-113852400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr6:113852000-113852400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr6:113852000-113852400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:113852000-113852400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:113852000-113852400	Enhancers	HepG2	liver
20	chr6:113852000-113852400	Enhancers	NH-A	brain
21	chr6:113852000-113852400	Enhancers	Osteobl	bone
22	chr6:113852000-113852600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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