Variant report

Variant	rs560213939
Chromosome Location	chr11:17759136-17759137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467717	chr11:17713507-17791822	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv553588	chr11:17713507-17791822	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv825772	chr11:17723530-17783128	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1037585	chr11:17730586-17768346	Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1038119	chr11:17744915-17794577	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv467718	chr11:17744992-17809724	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
7	nsv553589	chr11:17744992-17809724	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
8	esv1793678	chr11:17745099-17786436	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv521511	chr11:17749028-17771487	Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv516767	chr11:17758587-17809724	Bivalent Enhancer Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17755800-17761200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
2	chr11:17757000-17759800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
3	chr11:17757000-17771800	Weak transcription	Right Atrium	heart
4	chr11:17757200-17760800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr11:17757600-17759600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
6	chr11:17757600-17760400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
7	chr11:17757600-17761200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:17757600-17761400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:17757600-17761600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:17757800-17760800	Flanking Active TSS	Fetal Brain Female	brain
11	chr11:17757800-17762000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
12	chr11:17758000-17759600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:17758000-17760200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:17758000-17761000	Weak transcription	Pancreas	Pancrea
15	chr11:17758200-17759600	Bivalent/Poised TSS	Brain Anterior Caudate	brain
16	chr11:17758400-17760000	Bivalent/Poised TSS	Brain Angular Gyrus	brain
17	chr11:17758400-17760600	Bivalent Enhancer	Fetal Muscle Leg	muscle
18	chr11:17758800-17759200	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr11:17758800-17759600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
20	chr11:17758800-17760400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:17758800-17761200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:17759000-17759200	Weak transcription	Gastric	stomach
23	chr11:17759000-17759400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:17759000-17759800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
25	chr11:17759000-17760200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
26	chr11:17759000-17760200	Enhancers	Fetal Brain Male	brain
27	chr11:17759000-17761000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
28	chr11:17759000-17761000	Flanking Active TSS	Brain Germinal Matrix	brain

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