Variant report

Variant	rs56023152
Chromosome Location	chr4:79552652-79552653
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79550103..79553175-chr4:79717288..79720915,3	K562	blood:
2	chr4:79549184..79553600-chr4:79560172..79565329,6	K562	blood:
3	chr4:79547404..79553256-chr4:79694666..79698430,7	K562	blood:

Variant related genes	Relation type
ENSG00000238816	Chromatin interaction
ENSG00000138756	Chromatin interaction
ENSG00000260278	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1042515	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11727844	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11728517	0.83[ASN][1000 genomes]
rs12640075	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17003396	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35628566	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57415147	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57896096	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59133103	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5950	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67280698	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6817792	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6819559	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6836185	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6837823	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72607862	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72607863	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72607864	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72607865	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72607866	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668240	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79542200-79555600	Enhancers	Fetal Intestine Small	intestine
2	chr4:79542600-79555600	Enhancers	Fetal Intestine Large	intestine
3	chr4:79546600-79553000	Enhancers	Placenta	Placenta
4	chr4:79548000-79553200	Enhancers	Placenta Amnion	Placenta Amnion
5	chr4:79548200-79555000	Weak transcription	Osteobl	bone
6	chr4:79548600-79553600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:79548800-79557400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr4:79549600-79560000	Weak transcription	HMEC	breast
9	chr4:79549800-79554200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:79550000-79552800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr4:79550200-79553200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr4:79550200-79556600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr4:79550400-79555000	Weak transcription	NHDF-Ad	bronchial
14	chr4:79550400-79564200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:79550600-79552800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr4:79551200-79554200	Weak transcription	Brain Hippocampus Middle	brain
17	chr4:79551200-79554400	Weak transcription	Brain Substantia Nigra	brain
18	chr4:79551400-79553200	Enhancers	K562	blood
19	chr4:79551400-79553600	Weak transcription	Left Ventricle	heart
20	chr4:79551400-79553600	Weak transcription	Pancreas	Pancrea
21	chr4:79551400-79555200	Weak transcription	Right Atrium	heart
22	chr4:79551400-79558400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr4:79551400-79578200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr4:79551600-79552800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr4:79551600-79553800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr4:79551600-79555000	Weak transcription	Adipose Nuclei	Adipose
27	chr4:79551600-79555600	Enhancers	Primary B cells from peripheral blood	blood
28	chr4:79552000-79553800	Weak transcription	Brain Anterior Caudate	brain
29	chr4:79552000-79554600	Enhancers	Primary B cells from cord blood	blood
30	chr4:79552400-79552800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr4:79552600-79553000	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr4:79552600-79554600	Weak transcription	GM12878-XiMat	blood

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