Variant report

Variant	rs560235258
Chromosome Location	chr6:28770645-28770646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28756573..28759569-chr6:28769791..28772080,4	K562	blood:
2	chr6:28770520..28773672-chr6:28829844..28832870,3	K562	blood:
3	chr6:28770558..28773254-chr6:28806737..28808772,2	K562	blood:
4	chr6:28769403..28772112-chr6:28910261..28912768,2	K562	blood:
5	chr6:28769803..28772263-chr6:28862688..28865946,3	MCF-7	breast:
6	chr6:28768996..28771268-chr6:28774440..28778213,3	K562	blood:

Variant related genes	Relation type
ENSG00000225173	Chromatin interaction
ENSG00000225595	Chromatin interaction
ENSG00000204709	Chromatin interaction
ENSG00000224157	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3384463	chr6:28759027-28776259	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2621756	chr6:28762692-28779791	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv2322180	chr6:28764675-28780578	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv9558	chr6:28770281-28785058	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv3410540	chr6:28770455-28785112	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3322630	chr6:28770519-28785092	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	esv3486939	chr6:28770525-28785051	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv3486940	chr6:28770525-28785051	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28770200-28771600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr6:28770200-28771800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
3	chr6:28770200-28771800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr6:28770400-28770800	Active TSS	Hela-S3	cervix
5	chr6:28770400-28771200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:28770400-28771400	Enhancers	GM12878-XiMat	blood
7	chr6:28770400-28771600	Active TSS	H9 Cell Line	embryonic stem cell
8	chr6:28770400-28771600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:28770400-28771600	Active TSS	K562	blood
10	chr6:28770400-28771800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr6:28770400-28771800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
12	chr6:28770400-28771800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
13	chr6:28770400-28771800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
14	chr6:28770400-28771800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
15	chr6:28770400-28771800	Active TSS	A549	lung
16	chr6:28770600-28770800	Bivalent/Poised TSS	HepG2	liver
17	chr6:28770600-28770800	Enhancers	HMEC	breast
18	chr6:28770600-28771000	Active TSS	NHEK	skin
19	chr6:28770600-28771200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:28770600-28771800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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