Variant report

Variant	rs560241460
Chromosome Location	chr15:40572459-40572460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40572270..40573835-chr15:40597340..40599224,2	MCF-7	breast:
2	chr15:40572393..40574286-chr15:40615089..40617839,2	K562	blood:
3	chr15:40571973..40573796-chr15:40712353..40713860,2	K562	blood:
4	chr15:40571284..40573045-chr15:40595754..40597845,2	K562	blood:
5	chr15:40571385..40572541-chr15:40629850..40630639,3	MCF-7	breast:
6	chr15:40569115..40573106-chr15:40573581..40578796,5	K562	blood:

Variant related genes	Relation type
ENSG00000259330	Chromatin interaction
ENSG00000230778	Chromatin interaction
ENSG00000188549	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv904095	chr15:40525430-40591570	Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv471240	chr15:40528155-40595627	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
5	nsv904096	chr15:40550149-40604777	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv510660	chr15:40552906-40721883	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
7	nsv904097	chr15:40555065-40595627	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv517541	chr15:40557268-40595627	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	esv1850798	chr15:40560607-40622191	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
10	nsv904098	chr15:40564576-40586537	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv457118	chr15:40565705-40606484	Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
12	nsv569227	chr15:40565705-40606484	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
13	esv3355014	chr15:40572360-40576658	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40568000-40573400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:40569000-40573800	Weak transcription	Pancreas	Pancrea
3	chr15:40569400-40572800	Bivalent Enhancer	Fetal Muscle Leg	muscle
4	chr15:40571000-40572600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:40571000-40572800	Bivalent Enhancer	Fetal Lung	lung
6	chr15:40571000-40574600	Enhancers	Fetal Heart	heart
7	chr15:40571400-40572600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr15:40571600-40572600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr15:40571600-40572800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
10	chr15:40571600-40573000	Bivalent Enhancer	Stomach Mucosa	stomach
11	chr15:40571600-40574000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr15:40571600-40576800	Bivalent Enhancer	Fetal Brain Male	brain
13	chr15:40571800-40572600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
14	chr15:40571800-40572600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
15	chr15:40571800-40572600	Bivalent/Poised TSS	Fetal Brain Female	brain
16	chr15:40571800-40572800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
17	chr15:40571800-40572800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
18	chr15:40571800-40572800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:40571800-40572800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:40571800-40572800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
21	chr15:40571800-40573000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
22	chr15:40571800-40573400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr15:40572000-40572600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
24	chr15:40572000-40572600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
25	chr15:40572000-40572800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
26	chr15:40572000-40572800	Bivalent Enhancer	Fetal Intestine Small	intestine
27	chr15:40572000-40573600	Bivalent/Poised TSS	Brain Anterior Caudate	brain
28	chr15:40572000-40573600	Weak transcription	Gastric	stomach
29	chr15:40572000-40574000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
30	chr15:40572000-40574000	Bivalent Enhancer	Fetal Intestine Large	intestine
31	chr15:40572000-40574000	Bivalent Enhancer	Fetal Stomach	stomach
32	chr15:40572000-40574400	Weak transcription	Hela-S3	cervix
33	chr15:40572000-40574400	Weak transcription	K562	blood
34	chr15:40572000-40592800	Weak transcription	Dnd41	blood
35	chr15:40572200-40572800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
36	chr15:40572200-40574000	Weak transcription	Right Atrium	heart
37	chr15:40572400-40572600	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr15:40572400-40572600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr15:40572400-40573000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr15:40572400-40573600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr15:40572400-40573800	Weak transcription	Right Ventricle	heart

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