Variant report

Variant	rs56030094
Chromosome Location	chr9:71895950-71895951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:71893881..71896810-chr9:71896857..71898912,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:50 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv931684	chr9:71417110-71957723	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1049175	chr9:71418242-71986910	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1035823	chr9:71465139-71901672	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv466396	chr9:71471912-71935577	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv614548	chr9:71471912-71935577	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv1035477	chr9:71511927-71959487	Enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv831610	chr9:71846941-72016835	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	esv1796249	chr9:71862129-71911566	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
11	esv1798130	chr9:71883224-71903309	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv1810420	chr9:71883224-71903309	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv1850866	chr9:71883224-71903309	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3481655	chr9:71893432-71898430	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3495891	chr9:71894099-71898637	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3481654	chr9:71894157-71898005	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3495894	chr9:71894182-71898180	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3423342	chr9:71894682-71897680	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv2553986	chr9:71894908-71897473	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3481653	chr9:71894916-71896957	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3481648	chr9:71895132-71897130	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv512103	chr9:71895214-71896920	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv17781	chr9:71895230-71896481	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv820687	chr9:71895230-71896559	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv3495893	chr9:71895236-71896726	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv3481650	chr9:71895246-71896699	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv9577	chr9:71895267-71896736	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv3405071	chr9:71895270-71896646	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv2210971	chr9:71895270-71896692	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
30	esv3481656	chr9:71895271-71896681	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
31	esv3495892	chr9:71895276-71896703	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
32	esv3495890	chr9:71895291-71896650	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
33	esv3481651	chr9:71895301-71896667	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
34	esv3481649	chr9:71895302-71896665	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
35	esv3481657	chr9:71895312-71896648	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
36	esv3495895	chr9:71895312-71896648	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
37	nsv511406	chr9:71895369-71896250	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
38	esv988008	chr9:71895582-71896481	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
39	nsv614561	chr9:71895608-71896449	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
40	esv1793672	chr9:71895608-71898527	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
41	esv1798976	chr9:71895608-71898527	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
42	esv1844413	chr9:71895608-71898527	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
43	nsv614562	chr9:71895608-71898527	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
44	nsv614563	chr9:71895608-71898969	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
45	nsv614564	chr9:71895608-71903309	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
46	nsv614565	chr9:71895608-71903717	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
47	nsv614566	chr9:71895660-71898969	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
48	esv1817873	chr9:71895731-71898527	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
49	esv1832538	chr9:71895731-71898969	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
50	esv1836549	chr9:71895731-71898969	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71895000-71897400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr9:71895000-71898000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:71895200-71897400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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