Variant report

Variant	rs560311180
Chromosome Location	chr11:65927201-65927202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
5	esv1809358	chr11:65916558-65935189	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1811442	chr11:65922589-65939026	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv1804701	chr11:65922589-65957003	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv1813498	chr11:65922589-65957003	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv362	chr11:65927138-65948793	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65905200-65947000	Weak transcription	Fetal Lung	lung
2	chr11:65905400-65939600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr11:65905800-65952800	Weak transcription	Fetal Stomach	stomach
4	chr11:65906000-65960200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:65910000-65939600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:65910600-65939600	Weak transcription	NHDF-Ad	bronchial
7	chr11:65911000-65939400	Weak transcription	NH-A	brain
8	chr11:65911000-65943200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:65913400-65929800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr11:65913400-65951000	Weak transcription	Spleen	Spleen
11	chr11:65914200-65939600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr11:65914600-65929600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:65918000-65949200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:65919000-65928600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:65919000-65928600	Weak transcription	Left Ventricle	heart
16	chr11:65919000-65939800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr11:65920200-65928000	Weak transcription	Primary T cells from cord blood	blood
18	chr11:65920400-65954800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:65921000-65932400	Weak transcription	Primary B cells from cord blood	blood
20	chr11:65924800-65928000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr11:65924800-65943200	Weak transcription	NHEK	skin
22	chr11:65925000-65939400	Weak transcription	Osteobl	bone
23	chr11:65925000-65939800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:65925200-65928200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr11:65925200-65928200	Weak transcription	A549	lung
26	chr11:65925200-65932400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr11:65925200-65939600	Weak transcription	HMEC	breast
28	chr11:65925400-65928200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr11:65925400-65955000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:65925600-65952800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:65925800-65927400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:65925800-65929200	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:65925800-65955000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:65926000-65928200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr11:65926000-65928200	Weak transcription	GM12878-XiMat	blood
36	chr11:65926800-65927600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:65926800-65927600	Enhancers	Fetal Brain Male	brain
38	chr11:65926800-65928000	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr11:65926800-65929400	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr11:65927000-65927400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr11:65927000-65927400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:65927000-65927400	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr11:65927000-65927400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr11:65927000-65927400	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr11:65927000-65927400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:65927000-65927400	Enhancers	Brain Substantia Nigra	brain
47	chr11:65927000-65927400	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr11:65927000-65927400	Enhancers	Fetal Brain Female	brain
49	chr11:65927000-65927400	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr11:65927000-65927800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links