Variant report

Variant	rs560311322
Chromosome Location	chr5:61293596-61293597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:61290242..61292667-chr5:61292946..61295835,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020693	chr5:61098865-61357032	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv881723	chr5:61183375-61311715	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv881724	chr5:61257159-61318424	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1024090	chr5:61258759-61921150	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv881725	chr5:61265820-61376320	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv508363	chr5:61287078-61362885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2619200	chr5:61292891-61294521	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv3412717	chr5:61292945-61294943	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv7742	chr5:61293391-61294151	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv2046885	chr5:61293440-61294150	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3521922	chr5:61293519-61294040	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv3469270	chr5:61293530-61294037	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv3521920	chr5:61293538-61294063	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv3521919	chr5:61293554-61293989	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv3469272	chr5:61293557-61294028	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv3469269	chr5:61293561-61294026	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv3469271	chr5:61293574-61293980	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv3521921	chr5:61293574-61294008	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv3521923	chr5:61293583-61294014	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv3394847	chr5:61293594-61293978	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61288000-61294800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:61292600-61295400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:61293200-61294200	Weak transcription	Fetal Intestine Large	intestine
4	chr5:61293400-61294600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:61293400-61296200	Weak transcription	Fetal Intestine Small	intestine

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