Variant report

Variant	rs560317327
Chromosome Location	chr8:67357515-67357516
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67344979..67348651-chr8:67356606..67358747,3	K562	blood:
2	chr8:67351366..67354034-chr8:67356194..67358324,2	K562	blood:

Variant related genes	Relation type
ENSG00000147576	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv3339106	chr8:67356798-67361196	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67352000-67358600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:67352000-67363600	Weak transcription	Esophagus	oesophagus
3	chr8:67352200-67357800	Weak transcription	Left Ventricle	heart
4	chr8:67352200-67358000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:67352200-67358000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr8:67352200-67358000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr8:67352200-67358000	Weak transcription	Pancreas	Pancrea
8	chr8:67352200-67360200	Weak transcription	Lung	lung
9	chr8:67352200-67360200	Weak transcription	Ovary	ovary
10	chr8:67352200-67360600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:67352200-67361000	Weak transcription	Spleen	Spleen
12	chr8:67352200-67361200	Weak transcription	Gastric	stomach
13	chr8:67352200-67361200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr8:67352200-67364600	Weak transcription	Psoas Muscle	Psoas
15	chr8:67352400-67357600	Weak transcription	Brain Hippocampus Middle	brain
16	chr8:67352400-67357800	Weak transcription	Brain Anterior Caudate	brain
17	chr8:67352400-67358600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr8:67352400-67360200	Weak transcription	Right Ventricle	heart
19	chr8:67352400-67360800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr8:67352400-67361600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr8:67352400-67363600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr8:67352400-67366600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr8:67352600-67358200	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr8:67352600-67363600	Weak transcription	Colon Smooth Muscle	Colon
25	chr8:67352800-67358000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr8:67353000-67358000	Weak transcription	HSMMtube	muscle
27	chr8:67353200-67358400	Weak transcription	Fetal Heart	heart
28	chr8:67353200-67361000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr8:67353200-67361200	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr8:67353400-67357600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr8:67353400-67357800	Weak transcription	GM12878-XiMat	blood
32	chr8:67353400-67358000	Weak transcription	HSMM	muscle
33	chr8:67353400-67358000	Weak transcription	Osteobl	bone
34	chr8:67353400-67358400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr8:67353400-67358600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr8:67353400-67365400	Weak transcription	Fetal Brain Male	brain
37	chr8:67353400-67368000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr8:67353600-67357600	Weak transcription	NHDF-Ad	bronchial
39	chr8:67353600-67358000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr8:67353600-67358000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr8:67353600-67360600	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr8:67353600-67365200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr8:67353600-67372400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr8:67353800-67357800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr8:67354000-67360000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr8:67354000-67367800	Weak transcription	Stomach Mucosa	stomach
47	chr8:67354200-67360400	Weak transcription	Placenta	Placenta
48	chr8:67354800-67359400	Weak transcription	Fetal Intestine Large	intestine
49	chr8:67355000-67361200	Weak transcription	Fetal Intestine Small	intestine
50	chr8:67355000-67365200	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links