Variant report

Variant	rs56033534
Chromosome Location	chr6:143296420-143296421
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2328416	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55712600	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55767322	0.88[EUR][1000 genomes]
rs55935958	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55942414	0.89[EUR][1000 genomes]
rs56201752	0.82[EUR][1000 genomes]
rs6920570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6939141	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7753290	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9484683	0.87[ASN][1000 genomes]
rs9484685	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv3419105	chr6:143294209-143297007	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143281600-143298600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:143296000-143297200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:143296000-143297600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr6:143296200-143297000	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr6:143296400-143296800	Enhancers	HUVEC	blood vessel
6	chr6:143296400-143297000	Enhancers	Primary B cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links