Variant report

Variant	rs56033754
Chromosome Location	chr5:96469189-96469190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17087363	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61564624	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73778005	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73778007	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv830412	chr5:96427305-96606619	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv830413	chr5:96450582-96509294	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96455400-96491800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr5:96456400-96478000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr5:96459800-96491800	Weak transcription	Primary B cells from cord blood	blood
4	chr5:96461400-96470200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:96461600-96470400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:96461600-96470400	Weak transcription	Fetal Muscle Leg	muscle
7	chr5:96463600-96471600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:96466200-96470000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:96466200-96470200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:96466400-96470200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:96466600-96469200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr5:96467200-96474000	Weak transcription	Brain Anterior Caudate	brain
13	chr5:96467400-96471600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:96467800-96469400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:96468200-96469400	Enhancers	Dnd41	blood
16	chr5:96468400-96469200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr5:96468600-96469200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:96468600-96469600	Enhancers	Primary T cells from cord blood	blood
19	chr5:96468600-96471800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr5:96468800-96469200	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr5:96468800-96469400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr5:96469000-96469200	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr5:96469000-96469400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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