Variant report

Variant	rs56034729
Chromosome Location	chr13:30880598-30880599
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30880213..30882773-chr13:31038194..31039987,2	K562	blood:

Variant related genes	Relation type
ENSG00000189403	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3327826	chr13:30880377-30882925	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	esv2530366	chr13:30880598-30880598	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30861000-30880800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:30866800-30880800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr13:30868400-30880800	Weak transcription	Left Ventricle	heart
4	chr13:30876000-30880600	Enhancers	Fetal Brain Male	brain
5	chr13:30876200-30880600	Weak transcription	Ovary	ovary
6	chr13:30876400-30880800	Weak transcription	Lung	lung
7	chr13:30876600-30880600	Enhancers	Fetal Heart	heart
8	chr13:30877000-30880600	Enhancers	Primary B cells from cord blood	blood
9	chr13:30877200-30880600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr13:30877400-30880600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr13:30877400-30880600	Enhancers	Primary B cells from peripheral blood	blood
12	chr13:30877800-30880800	Weak transcription	Spleen	Spleen
13	chr13:30878000-30880600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr13:30878000-30880600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr13:30878200-30880600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr13:30878400-30880600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr13:30878800-30880600	Weak transcription	Brain Hippocampus Middle	brain
18	chr13:30878800-30880800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr13:30879000-30880600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr13:30879400-30880600	Enhancers	Brain Substantia Nigra	brain
21	chr13:30879400-30880800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr13:30879400-30881000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr13:30879600-30880600	Enhancers	Primary hematopoietic stem cells	blood
24	chr13:30879600-30880600	Enhancers	Hela-S3	cervix
25	chr13:30879600-30880600	Enhancers	HSMMtube	muscle
26	chr13:30879600-30881000	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr13:30879600-30881000	Flanking Active TSS	HUVEC	blood vessel
28	chr13:30879600-30881600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr13:30879600-30882000	Active TSS	A549	lung
30	chr13:30879800-30880600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr13:30879800-30880600	Weak transcription	Fetal Kidney	kidney
32	chr13:30879800-30880600	Flanking Active TSS	NHEK	skin
33	chr13:30879800-30880800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr13:30879800-30882000	Active TSS	Fetal Thymus	thymus
35	chr13:30879800-30882200	Active TSS	HUES48 Cell Line	embryonic stem cell
36	chr13:30879800-30882200	Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr13:30879800-30882200	Active TSS	Psoas Muscle	Psoas
38	chr13:30879800-30882400	Active TSS	ES-I3 Cell Line	embryonic stem cell
39	chr13:30879800-30882400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr13:30880000-30880600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
41	chr13:30880000-30881000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr13:30880000-30881200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr13:30880000-30881800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr13:30880000-30881800	Active TSS	HMEC	breast
45	chr13:30880000-30882000	Active TSS	Colon Smooth Muscle	Colon
46	chr13:30880000-30882000	Active TSS	Thymus	Thymus
47	chr13:30880000-30882000	Active TSS	NH-A	brain
48	chr13:30880000-30882000	Active TSS	NHLF	lung
49	chr13:30880000-30882200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr13:30880000-30882200	Active TSS	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links