Variant report

Variant	rs56035820
Chromosome Location	chr19:51519710-51519711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10425377	0.95[EUR][1000 genomes]
rs10426	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11668612	0.82[EUR][1000 genomes]
rs11668629	0.81[EUR][1000 genomes]
rs35125447	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62115757	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7248342	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7252982	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912291	chr19:51505725-51537682	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51514800-51520200	Weak transcription	Right Atrium	heart
2	chr19:51517400-51520200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr19:51518800-51520000	Weak transcription	Ovary	ovary
4	chr19:51518800-51520000	Enhancers	HMEC	breast
5	chr19:51519000-51519800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr19:51519200-51519800	Genic enhancers	Esophagus	oesophagus
7	chr19:51519200-51520000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr19:51519400-51520000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr19:51519600-51520000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr19:51519600-51520000	Enhancers	NHEK	skin
11	chr19:51519600-51520200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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