Variant report

Variant	rs560361894
Chromosome Location	chr5:112478393-112478394
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv3402438	chr5:112477690-112478501	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3387546	chr5:112477719-112478456	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3499336	chr5:112477729-112478486	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3469717	chr5:112477737-112478478	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3469716	chr5:112477738-112478495	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3499337	chr5:112477746-112478401	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3499338	chr5:112477770-112478417	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3499339	chr5:112477774-112478424	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv599397	chr5:112477794-112478397	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv599398	chr5:112477897-112478397	Enhancers Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv599399	chr5:112477897-112479004	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv599400	chr5:112477948-112479902	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112451000-112478800	Weak transcription	Aorta	Aorta
2	chr5:112467400-112493200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr5:112470200-112491000	Weak transcription	Fetal Kidney	kidney
4	chr5:112470600-112482000	Weak transcription	Fetal Heart	heart
5	chr5:112474800-112482400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:112475600-112479200	Strong transcription	Liver	Liver
7	chr5:112475800-112479600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:112476200-112478400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:112476200-112478400	Enhancers	NHDF-Ad	bronchial
10	chr5:112476200-112479400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr5:112476400-112478600	Enhancers	Osteobl	bone
12	chr5:112476600-112478600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:112476600-112478600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:112476600-112478800	Enhancers	HMEC	breast
15	chr5:112476600-112478800	Genic enhancers	NHEK	skin
16	chr5:112476800-112478400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr5:112476800-112478800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr5:112476800-112478800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:112476800-112478800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr5:112476800-112479800	Weak transcription	Right Ventricle	heart
21	chr5:112477000-112478600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:112477000-112483200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr5:112477200-112483200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr5:112477200-112485400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:112477400-112478600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr5:112477400-112478600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr5:112477400-112481400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr5:112477400-112482000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr5:112477400-112482400	Weak transcription	Adipose Nuclei	Adipose
30	chr5:112477400-112482600	Weak transcription	NHLF	lung
31	chr5:112477400-112486600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr5:112477400-112486600	Weak transcription	Right Atrium	heart
33	chr5:112477400-112489200	Weak transcription	Fetal Muscle Leg	muscle
34	chr5:112477400-112500600	Weak transcription	Fetal Stomach	stomach
35	chr5:112477600-112478400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr5:112477600-112478800	Strong transcription	Ovary	ovary
37	chr5:112477600-112481200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr5:112477600-112482600	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr5:112477600-112482800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr5:112477600-112482800	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr5:112477600-112483000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr5:112477800-112478600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr5:112477800-112482400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr5:112478000-112478800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr5:112478000-112482400	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr5:112478000-112483000	Weak transcription	Left Ventricle	heart
47	chr5:112478000-112485600	Weak transcription	Pancreas	Pancrea
48	chr5:112478000-112497000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr5:112478200-112480600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr5:112478200-112480800	Weak transcription	Esophagus	oesophagus

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