Variant report

Variant	rs56036824
Chromosome Location	chr12:117235233-117235234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11068194	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11068195	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11068196	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11068201	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16946996	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16947003	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17582582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2016622	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57033312	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58963573	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59935649	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61442995	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7302199	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832523	chr12:117090343-117273810	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117198000-117256200	Weak transcription	Hela-S3	cervix
2	chr12:117198200-117236600	Weak transcription	A549	lung
3	chr12:117221200-117236800	Weak transcription	Brain Hippocampus Middle	brain
4	chr12:117222000-117248000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr12:117222200-117235400	Weak transcription	Thymus	Thymus
6	chr12:117222400-117236600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr12:117222400-117236800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr12:117222600-117236600	Weak transcription	Brain Angular Gyrus	brain
9	chr12:117222600-117236600	Weak transcription	Brain Anterior Caudate	brain
10	chr12:117222800-117236600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr12:117222800-117236600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr12:117223600-117246200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr12:117225000-117236600	Weak transcription	Primary B cells from cord blood	blood
14	chr12:117225000-117237600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr12:117225200-117236600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr12:117225200-117236800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr12:117225200-117256200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr12:117225600-117235400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr12:117227000-117249200	Weak transcription	Primary T cells from cord blood	blood
20	chr12:117227400-117235400	Weak transcription	Dnd41	blood
21	chr12:117228000-117235600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr12:117228400-117256400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr12:117229000-117235600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr12:117229200-117256200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr12:117232200-117236800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr12:117233000-117238000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr12:117234000-117235400	Strong transcription	Fetal Brain Female	brain
28	chr12:117234000-117237600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr12:117234600-117246800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr12:117234800-117236400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
31	chr12:117234800-117238000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr12:117235000-117235800	Weak transcription	Brain Germinal Matrix	brain
33	chr12:117235200-117235400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr12:117235200-117238200	ZNF genes & repeats	Fetal Thymus	thymus

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