Variant report

Variant	rs560377361
Chromosome Location	chr3:158468289-158468290
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:158460949..158465729-chr3:158466898..158470534,5	K562	blood:
2	chr3:158461736..158463794-chr3:158468012..158469829,2	K562	blood:
3	chr3:158465698..158468442-chr3:158472152..158473893,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118855	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv1004124	chr3:158146715-158808638	Genic enhancers Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1014255	chr3:158358860-158768542	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv532665	chr3:158370013-158754245	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv948755	chr3:158388780-158672287	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv877692	chr3:158430706-158828643	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv1001450	chr3:158440011-158768399	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv536777	chr3:158440011-158768399	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv966963	chr3:158466917-158469526	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158449800-158483000	Weak transcription	Fetal Heart	heart
2	chr3:158450800-158485400	Weak transcription	Psoas Muscle	Psoas
3	chr3:158451000-158484200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:158451000-158485800	Weak transcription	Fetal Kidney	kidney
5	chr3:158453600-158486400	Weak transcription	Esophagus	oesophagus
6	chr3:158457400-158486000	Weak transcription	Right Ventricle	heart
7	chr3:158457800-158486200	Weak transcription	Pancreas	Pancrea
8	chr3:158458000-158471200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:158459600-158468400	Strong transcription	Fetal Muscle Trunk	muscle
10	chr3:158460000-158468600	Strong transcription	Fetal Intestine Large	intestine
11	chr3:158460400-158486000	Weak transcription	Brain Hippocampus Middle	brain
12	chr3:158460800-158469400	Weak transcription	Ovary	ovary
13	chr3:158461600-158468400	Strong transcription	Fetal Intestine Small	intestine
14	chr3:158461600-158468600	Strong transcription	Fetal Stomach	stomach
15	chr3:158462800-158471200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr3:158464400-158472600	Weak transcription	Colon Smooth Muscle	Colon
17	chr3:158465400-158469200	Weak transcription	NH-A	brain
18	chr3:158465400-158469800	Weak transcription	HSMMtube	muscle
19	chr3:158465400-158480000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:158465800-158480200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:158466000-158472800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:158466000-158486000	Weak transcription	Aorta	Aorta
23	chr3:158466000-158486200	Weak transcription	Gastric	stomach
24	chr3:158466200-158482800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:158466200-158486200	Weak transcription	Brain Angular Gyrus	brain
26	chr3:158466200-158486200	Weak transcription	Fetal Brain Male	brain
27	chr3:158466600-158469000	Strong transcription	Fetal Lung	lung
28	chr3:158466600-158469400	Strong transcription	Osteobl	bone
29	chr3:158466600-158469600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr3:158466600-158480000	Weak transcription	Fetal Brain Female	brain
31	chr3:158466600-158482600	Weak transcription	A549	lung
32	chr3:158466600-158485600	Weak transcription	Colonic Mucosa	Colon
33	chr3:158466600-158486200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr3:158466800-158469400	Weak transcription	Placenta	Placenta
35	chr3:158466800-158470000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr3:158466800-158470200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr3:158466800-158471600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr3:158466800-158473000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr3:158466800-158480200	Weak transcription	Fetal Muscle Leg	muscle
40	chr3:158466800-158480200	Weak transcription	Left Ventricle	heart
41	chr3:158466800-158486000	Weak transcription	Spleen	Spleen
42	chr3:158466800-158486200	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr3:158466800-158486200	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr3:158467000-158468800	Weak transcription	Brain Germinal Matrix	brain
45	chr3:158467000-158483000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr3:158467600-158479000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr3:158467600-158480200	Weak transcription	Adipose Nuclei	Adipose
48	chr3:158467600-158485000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr3:158467600-158486000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr3:158467800-158480000	Weak transcription	Hela-S3	cervix

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