Variant report

Variant	rs560383295
Chromosome Location	chr6:164521916-164521917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163837764..163839976-chr6:164521625..164524241,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv3400983	chr6:164521187-164523735	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164506400-164530200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:164515000-164522800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:164517800-164522000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:164518800-164523000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:164519000-164528400	Weak transcription	Psoas Muscle	Psoas
6	chr6:164519800-164525000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:164520200-164522400	Weak transcription	Placenta	Placenta
8	chr6:164520200-164522800	Weak transcription	Spleen	Spleen
9	chr6:164520200-164523000	Weak transcription	HSMM	muscle
10	chr6:164520200-164528600	Weak transcription	Esophagus	oesophagus
11	chr6:164520400-164522800	Weak transcription	HUVEC	blood vessel
12	chr6:164520400-164523400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:164520400-164529200	Weak transcription	Adipose Nuclei	Adipose
14	chr6:164520600-164522000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:164520600-164522600	Weak transcription	Lung	lung
16	chr6:164520600-164522800	Weak transcription	Right Atrium	heart
17	chr6:164520800-164522800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:164520800-164522800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:164520800-164523800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr6:164521000-164522400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:164521000-164522800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr6:164521000-164523000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:164521000-164523000	Weak transcription	Brain Angular Gyrus	brain
24	chr6:164521000-164523800	Weak transcription	Fetal Brain Female	brain
25	chr6:164521000-164524800	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:164521200-164522800	Weak transcription	Brain Anterior Caudate	brain
27	chr6:164521600-164522600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr6:164521600-164522600	Weak transcription	Left Ventricle	heart
29	chr6:164521600-164522800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr6:164521600-164522800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr6:164521600-164522800	Weak transcription	Brain Germinal Matrix	brain
32	chr6:164521600-164522800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr6:164521600-164523400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr6:164521600-164523400	Weak transcription	Fetal Brain Male	brain
35	chr6:164521800-164522800	Weak transcription	Brain Hippocampus Middle	brain
36	chr6:164521800-164522800	Weak transcription	Brain Substantia Nigra	brain
37	chr6:164521800-164523000	Weak transcription	Fetal Heart	heart
38	chr6:164521800-164523000	Enhancers	Right Ventricle	heart

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