Variant report

Variant	rs560392919
Chromosome Location	chr5:126415563-126415564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:126408546..126411993-chr5:126414423..126416954,3	MCF-7	breast:
2	chr5:126408693..126410786-chr5:126410811..126415809,5	K562	blood:
3	chr5:126414653..126417041-chr5:126422824..126425859,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164241	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv869897	chr5:126224358-126445210	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv1816248	chr5:126399039-126486539	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3448024	chr5:126415498-126415983	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126409600-126415600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:126409600-126415600	Weak transcription	K562	blood
3	chr5:126409800-126415600	Weak transcription	NHEK	skin
4	chr5:126409800-126415800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:126412200-126416000	Enhancers	HepG2	liver
6	chr5:126412400-126416000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:126412600-126427400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:126412800-126415800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:126412800-126416000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:126412800-126416000	Weak transcription	NHLF	lung
11	chr5:126413200-126417000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr5:126413600-126415600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:126413600-126416000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:126413600-126421800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr5:126413600-126424000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr5:126413600-126428000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr5:126413800-126415600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:126414000-126415600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:126414000-126415600	Weak transcription	Fetal Intestine Small	intestine
20	chr5:126414000-126416200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr5:126414200-126415600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr5:126414200-126415600	Weak transcription	Fetal Intestine Large	intestine
23	chr5:126414800-126415800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:126415000-126416000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr5:126415000-126417000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr5:126415200-126416800	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr5:126415200-126416800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:126415200-126416800	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr5:126415200-126416800	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr5:126415400-126416800	Enhancers	H1 Cell Line	embryonic stem cell
31	chr5:126415400-126416800	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr5:126415400-126416800	Enhancers	HMEC	breast
33	chr5:126415400-126417200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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