Variant report

Variant	rs560402009
Chromosome Location	chr12:105681339-105681340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1044450	chr12:105668451-105682822	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv510589	chr12:105670071-105743755	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3492286	chr12:105680848-105681708	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3511409	chr12:105680886-105681685	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3511412	chr12:105680897-105681633	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3492274	chr12:105680905-105681674	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv3656	chr12:105680909-105681748	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv3492241	chr12:105680914-105681669	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
10	esv3492252	chr12:105680917-105681633	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
11	esv3511410	chr12:105680922-105681649	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3511411	chr12:105680926-105681647	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv826508	chr12:105680952-105681730	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv3492263	chr12:105680967-105681604	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
15	esv3511413	chr12:105680977-105681605	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
16	esv3492297	chr12:105680981-105681603	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
17	esv3511414	chr12:105680981-105681603	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
18	esv3381379	chr12:105680987-105681708	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
19	esv16955	chr12:105680990-105681599	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105676200-105681400	Weak transcription	HepG2	liver
2	chr12:105676400-105681400	Weak transcription	A549	lung
3	chr12:105681200-105682400	Enhancers	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links