Variant report

Variant	rs56041591
Chromosome Location	chr7:103254280-103254281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103253081..103256166-chr7:103404446..103406601,3	K562	blood:
2	chr7:103239547..103241356-chr7:103252874..103254925,2	K562	blood:
3	chr7:103253053..103254863-chr7:103298954..103300587,2	K562	blood:
4	chr7:103246004..103248480-chr7:103252679..103255017,2	K562	blood:
5	chr7:103253050..103254714-chr7:103265200..103267338,2	MCF-7	breast:
6	chr7:103253287..103254849-chr7:103287404..103290090,2	K562	blood:
7	chr7:103253816..103255808-chr7:103257490..103259015,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1860686	0.92[ASN][1000 genomes]
rs2299348	0.92[ASN][1000 genomes]
rs362628	0.92[ASN][1000 genomes]
rs362631	0.92[ASN][1000 genomes]
rs362672	0.92[ASN][1000 genomes]
rs41276151	0.92[ASN][1000 genomes]
rs56384750	0.92[ASN][1000 genomes]
rs67423770	0.92[ASN][1000 genomes]
rs67811550	0.92[ASN][1000 genomes]
rs67823578	0.92[ASN][1000 genomes]
rs720078	0.92[ASN][1000 genomes]
rs73177965	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73177989	1.00[AFR][1000 genomes]
rs73178001	1.00[AFR][1000 genomes]
rs73180106	1.00[AFR][1000 genomes]
rs82878	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103245000-103259600	Weak transcription	HepG2	liver
2	chr7:103253600-103255400	Enhancers	Fetal Heart	heart
3	chr7:103254000-103254400	Enhancers	Left Ventricle	heart
4	chr7:103254000-103255000	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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