Variant report

Variant	rs560437114
Chromosome Location	chr3:19512705-19512706
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010123	chr3:18990307-19989504	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1004602	chr3:19031671-19930052	Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv536511	chr3:19031671-19930052	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv948636	chr3:19335802-19856585	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	esv3386719	chr3:19454588-19895807	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv876595	chr3:19512074-19726308	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:19474400-19513200	Weak transcription	Brain Germinal Matrix	brain
2	chr3:19480400-19514400	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:19502200-19512800	Weak transcription	Primary B cells from cord blood	blood
4	chr3:19509600-19513000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:19510600-19512800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:19511200-19513000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:19511200-19515000	Weak transcription	Pancreas	Pancrea
8	chr3:19511800-19512800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr3:19512200-19513200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr3:19512400-19513000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr3:19512600-19512800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:19512600-19512800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr3:19512600-19513000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr3:19512600-19513000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr3:19512600-19513000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:19512600-19513200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr3:19512600-19513200	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr3:19512600-19513200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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