The 2.0 version of rSNPBase

Variant report

Variant rs560437578
Chromosome Location chr1:228343039-228343040
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:82 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:228332800-228349800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr1:228333200-228344600 Weak transcription Primary T helper naive cells from peripheral blood blood
3 chr1:228333800-228350400 Weak transcription Primary B cells from cord blood blood
4 chr1:228336800-228350200 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr1:228337200-228344400 Weak transcription Primary B cells from peripheral blood blood
6 chr1:228337600-228343600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
7 chr1:228337800-228343200 Weak transcription A549 lung
8 chr1:228337800-228349800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr1:228338000-228343600 Weak transcription Fetal Brain Female brain
10 chr1:228338000-228344000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
11 chr1:228338000-228349200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr1:228338000-228349600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
13 chr1:228338200-228344800 Weak transcription Primary T regulatory cells fromperipheralblood blood
14 chr1:228338200-228344800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
15 chr1:228338200-228352400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr1:228338400-228349200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
17 chr1:228339000-228344000 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr1:228339000-228346000 Weak transcription HMEC breast
19 chr1:228339400-228343400 Weak transcription Muscle Satellite Cultured Cells --
20 chr1:228339400-228344400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr1:228339400-228344400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr1:228339400-228345000 Weak transcription Breast Myoepithelial Primary Cells Breast
23 chr1:228339400-228352600 Weak transcription Brain Anterior Caudate brain
24 chr1:228339600-228344000 Weak transcription Adipose Nuclei Adipose
25 chr1:228339600-228345600 Weak transcription Right Atrium heart
26 chr1:228339600-228349000 Weak transcription NHLF lung
27 chr1:228339800-228343400 Weak transcription Brain Inferior Temporal Lobe brain
28 chr1:228339800-228343800 Weak transcription Gastric stomach
29 chr1:228339800-228343800 Weak transcription Skeletal Muscle Male skeletal muscle
30 chr1:228339800-228349400 Weak transcription Brain Angular Gyrus brain
31 chr1:228340000-228343600 Weak transcription Spleen Spleen
32 chr1:228340000-228344000 Weak transcription Liver Liver
33 chr1:228340000-228349200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr1:228340200-228345200 Weak transcription Right Ventricle heart
35 chr1:228340400-228343600 Strong transcription Fetal Stomach stomach
36 chr1:228340400-228343800 Weak transcription Pancreas Pancrea
37 chr1:228340600-228349600 Weak transcription Colon Smooth Muscle Colon
38 chr1:228341000-228344200 Enhancers Fetal Thymus thymus
39 chr1:228341600-228344400 Enhancers Thymus Thymus
40 chr1:228341800-228343600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr1:228341800-228343800 Enhancers Brain Substantia Nigra brain
42 chr1:228341800-228344000 Enhancers Primary hematopoietic stem cells blood
43 chr1:228341800-228345400 Enhancers Primary T helper cells PMA-I stimulated --
44 chr1:228342000-228343400 Enhancers NHEK skin
45 chr1:228342000-228343800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr1:228342000-228344200 Enhancers Primary T cells from cord blood blood
47 chr1:228342000-228344200 Enhancers Primary T killer naive cells fromperipheralblood blood
48 chr1:228342000-228344400 Enhancers Primary T cells fromperipheralblood blood
49 chr1:228342200-228343800 Enhancers Primary hematopoietic stem cells short term culture blood
50 chr1:228342200-228343800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015