Variant report

Variant	rs560461651
Chromosome Location	chr10:112687023-112687024
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:112684337..112687273-chr10:112688829..112691031,2	K562	blood:
2	chr10:112677343..112684329-chr10:112684383..112692296,16	K562	blood:

Variant related genes	Relation type
ENSG00000108061	Chromatin interaction
ENSG00000214413	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051566	chr10:112580049-112730573	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1035602	chr10:112636053-112781413	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1051327	chr10:112650316-112772917	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv540774	chr10:112650316-112772917	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv831985	chr10:112652089-112803103	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv1047865	chr10:112660427-112730573	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv1048809	chr10:112683822-112781413	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv1042020	chr10:112686323-112795159	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112680200-112687800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:112680600-112692400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr10:112680600-112696600	Weak transcription	Lung	lung
4	chr10:112680600-112706800	Weak transcription	Esophagus	oesophagus
5	chr10:112680800-112687800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr10:112680800-112691800	Weak transcription	Ovary	ovary
7	chr10:112680800-112691800	Weak transcription	Psoas Muscle	Psoas
8	chr10:112680800-112704600	Weak transcription	Aorta	Aorta
9	chr10:112681000-112687200	Weak transcription	Brain Angular Gyrus	brain
10	chr10:112681000-112687800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:112681000-112687800	Weak transcription	NH-A	brain
12	chr10:112681000-112690600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:112681000-112690800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:112681000-112692200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr10:112681000-112692400	Weak transcription	Right Atrium	heart
16	chr10:112681000-112696400	Weak transcription	Fetal Stomach	stomach
17	chr10:112681000-112696600	Weak transcription	Thymus	Thymus
18	chr10:112681000-112704600	Weak transcription	Right Ventricle	heart
19	chr10:112681200-112692000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr10:112681400-112691600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:112682000-112688400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:112682000-112691600	Weak transcription	NHEK	skin
23	chr10:112682000-112700600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:112682000-112702000	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr10:112682000-112702200	Weak transcription	Brain Germinal Matrix	brain
26	chr10:112682000-112704600	Weak transcription	Brain Hippocampus Middle	brain
27	chr10:112682000-112708400	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr10:112682000-112732400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr10:112682200-112688400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr10:112682200-112688400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr10:112682600-112689000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:112683000-112692000	Weak transcription	HSMM	muscle
33	chr10:112683000-112700800	Weak transcription	Dnd41	blood
34	chr10:112683200-112694000	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr10:112683600-112687800	Weak transcription	Fetal Brain Female	brain
36	chr10:112684000-112687400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:112684000-112687400	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr10:112684000-112691000	Weak transcription	Stomach Mucosa	stomach
39	chr10:112684200-112687200	Weak transcription	Colon Smooth Muscle	Colon
40	chr10:112684200-112688400	Weak transcription	Gastric	stomach
41	chr10:112684200-112689400	Weak transcription	NHDF-Ad	bronchial
42	chr10:112684200-112690000	Weak transcription	Liver	Liver
43	chr10:112684200-112691000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr10:112684200-112691400	Weak transcription	Fetal Heart	heart
45	chr10:112684200-112691400	Weak transcription	Rectal Smooth Muscle	rectum
46	chr10:112684200-112691800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr10:112684200-112691800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr10:112684200-112692000	Weak transcription	Hela-S3	cervix
49	chr10:112684200-112692200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:112684200-112696400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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