Variant report

Variant	rs56048296
Chromosome Location	chr8:58163781-58163782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 171 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:159)

rs_ID	r²[population]
rs10504221	0.83[ASN][1000 genomes]
rs10504223	0.83[ASN][1000 genomes]
rs10504224	0.83[ASN][1000 genomes]
rs10504225	0.83[ASN][1000 genomes]
rs10504226	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504227	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504228	1.00[ASN][1000 genomes]
rs11774585	0.83[ASN][1000 genomes]
rs11774645	0.83[ASN][1000 genomes]
rs11774697	0.83[ASN][1000 genomes]
rs11774847	0.83[ASN][1000 genomes]
rs11775568	0.83[ASN][1000 genomes]
rs11781690	0.83[ASN][1000 genomes]
rs11785258	0.83[ASN][1000 genomes]
rs11785260	0.83[ASN][1000 genomes]
rs11786043	0.83[ASN][1000 genomes]
rs11786074	0.83[ASN][1000 genomes]
rs1495865	0.83[ASN][1000 genomes]
rs1495866	0.83[ASN][1000 genomes]
rs16921937	0.83[ASN][1000 genomes]
rs16921952	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16921955	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17215621	1.00[ASN][1000 genomes]
rs17215649	1.00[ASN][1000 genomes]
rs17215676	1.00[ASN][1000 genomes]
rs17215753	1.00[ASN][1000 genomes]
rs17216187	1.00[ASN][1000 genomes]
rs17216236	1.00[ASN][1000 genomes]
rs17216711	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17804335	1.00[ASN][1000 genomes]
rs17804365	1.00[ASN][1000 genomes]
rs17804383	1.00[ASN][1000 genomes]
rs17804840	1.00[ASN][1000 genomes]
rs17804888	1.00[ASN][1000 genomes]
rs17805008	1.00[ASN][1000 genomes]
rs17805026	1.00[ASN][1000 genomes]
rs17805074	1.00[ASN][1000 genomes]
rs17805110	1.00[ASN][1000 genomes]
rs17805146	1.00[ASN][1000 genomes]
rs17805380	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17805439	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17816781	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2291764	0.83[ASN][1000 genomes]
rs2291765	0.83[ASN][1000 genomes]
rs28447218	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3814486	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55637580	0.83[ASN][1000 genomes]
rs55764517	1.00[ASN][1000 genomes]
rs55787104	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55812114	1.00[ASN][1000 genomes]
rs55825382	0.98[ASN][1000 genomes]
rs55855654	1.00[ASN][1000 genomes]
rs55868006	0.83[ASN][1000 genomes]
rs55986917	0.83[ASN][1000 genomes]
rs56082079	1.00[ASN][1000 genomes]
rs56155911	1.00[ASN][1000 genomes]
rs56180705	0.97[ASN][1000 genomes]
rs56192850	0.83[ASN][1000 genomes]
rs56255635	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56350499	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56372514	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56408763	0.83[ASN][1000 genomes]
rs56670121	0.83[ASN][1000 genomes]
rs56740825	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56741275	0.83[ASN][1000 genomes]
rs57131327	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57261109	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57669205	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57866073	0.83[ASN][1000 genomes]
rs57942497	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58053450	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58251024	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58438731	0.83[ASN][1000 genomes]
rs58559296	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58715581	0.83[ASN][1000 genomes]
rs58883273	0.83[ASN][1000 genomes]
rs58947041	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59034808	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59071610	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59528137	0.83[ASN][1000 genomes]
rs59549824	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59679713	0.83[ASN][1000 genomes]
rs59797486	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59873610	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60454728	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60466370	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60651159	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61201557	0.83[ASN][1000 genomes]
rs61212428	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61306359	0.83[ASN][1000 genomes]
rs61364624	0.83[ASN][1000 genomes]
rs61638902	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61733801	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61998258	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61998259	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66480865	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66509078	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66676208	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66796009	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66886949	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66893068	0.83[ASN][1000 genomes]
rs66936919	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67035623	0.83[ASN][1000 genomes]
rs67039591	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67042991	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67048677	0.83[ASN][1000 genomes]
rs67077711	0.83[ASN][1000 genomes]
rs67105789	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67243305	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67389108	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67492041	0.83[ASN][1000 genomes]
rs67630725	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67677367	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67886764	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67895971	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68076606	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6985942	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6987118	0.85[ASN][1000 genomes]
rs6989060	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6993531	0.83[ASN][1000 genomes]
rs7003276	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7003285	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7007128	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7010503	0.83[ASN][1000 genomes]
rs7011877	0.83[ASN][1000 genomes]
rs7015674	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72650847	0.83[ASN][1000 genomes]
rs72650849	0.83[ASN][1000 genomes]
rs72650852	1.00[ASN][1000 genomes]
rs72650853	1.00[ASN][1000 genomes]
rs72650855	1.00[ASN][1000 genomes]
rs72650856	0.97[ASN][1000 genomes]
rs72650858	1.00[ASN][1000 genomes]
rs72650861	1.00[ASN][1000 genomes]
rs72650869	0.98[ASN][1000 genomes]
rs72650876	1.00[ASN][1000 genomes]
rs72650877	1.00[ASN][1000 genomes]
rs72650879	1.00[ASN][1000 genomes]
rs72650880	1.00[ASN][1000 genomes]
rs72650885	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72650900	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72652908	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73607868	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73607869	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73607871	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73607874	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73607875	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73609760	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73609762	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73609764	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7813252	0.83[ASN][1000 genomes]
rs7820302	0.83[ASN][1000 genomes]
rs7820559	0.83[ASN][1000 genomes]
rs7826839	0.83[ASN][1000 genomes]
rs7827014	0.83[ASN][1000 genomes]
rs7838958	0.83[ASN][1000 genomes]
rs7840469	0.83[ASN][1000 genomes]
rs7846666	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs949856	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758161	chr8:57930392-58474449	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759618	chr8:57930392-58474449	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv12840	chr8:58046936-58196713	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3432915	chr8:58055026-58271178	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1793550	chr8:58063507-58215957	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv1804272	chr8:58063507-58215957	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv1814738	chr8:58063507-58215957	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv428200	chr8:58063507-58215957	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv831321	chr8:58086885-58237744	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	esv12323	chr8:58114793-58199474	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv981876	chr8:58153412-58174408	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58162400-58165000	Weak transcription	Fetal Brain Male	brain
2	chr8:58163200-58163800	Flanking Active TSS	GM12878-XiMat	blood
3	chr8:58163600-58164800	Weak transcription	Fetal Lung	lung

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