Variant report

Variant	rs560495059
Chromosome Location	chr2:178287631-178287632
allele	-/GAGT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv3457151	chr2:178285706-178290004	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3377993	chr2:178286406-178289204	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv2433824	chr2:178286700-178288386	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3457146	chr2:178286731-178289279	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3341566	chr2:178286931-178289079	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv3457148	chr2:178287406-178288604	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv8338	chr2:178287416-178288289	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv2084314	chr2:178287447-178288249	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv3457149	chr2:178287505-178288163	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	esv3524043	chr2:178287527-178288174	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	esv3524039	chr2:178287535-178288154	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	esv3524042	chr2:178287549-178288133	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
15	esv3524041	chr2:178287553-178288099	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
16	esv3457150	chr2:178287557-178288130	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
17	esv3457147	chr2:178287562-178288133	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
18	esv3457153	chr2:178287575-178288083	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
19	esv3524038	chr2:178287580-178288112	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
20	esv3335127	chr2:178287619-178288063	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178258800-178294200	Weak transcription	Thymus	Thymus
2	chr2:178263400-178291800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr2:178264200-178291600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr2:178270400-178294400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:178271800-178291600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr2:178272800-178295200	Weak transcription	Left Ventricle	heart
7	chr2:178273000-178288800	Weak transcription	GM12878-XiMat	blood
8	chr2:178273400-178288600	Weak transcription	Primary T cells from cord blood	blood
9	chr2:178274600-178291800	Weak transcription	Primary B cells from cord blood	blood
10	chr2:178276400-178291400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:178276800-178289800	Weak transcription	Fetal Intestine Large	intestine
12	chr2:178276800-178294400	Weak transcription	Psoas Muscle	Psoas
13	chr2:178277400-178291800	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr2:178279600-178294400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr2:178280200-178291600	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr2:178280400-178296000	Weak transcription	Small Intestine	intestine
17	chr2:178280800-178294400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr2:178281200-178289400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr2:178281200-178291600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr2:178281200-178292200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr2:178281800-178291800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr2:178283000-178294600	Weak transcription	Fetal Kidney	kidney
23	chr2:178283800-178294200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr2:178283800-178295200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr2:178284000-178294200	Weak transcription	NHLF	lung
26	chr2:178284200-178291600	Weak transcription	Fetal Lung	lung
27	chr2:178284400-178289400	Weak transcription	Adipose Nuclei	Adipose
28	chr2:178284400-178291800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr2:178284400-178292000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr2:178284400-178292000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr2:178284400-178294000	Weak transcription	Fetal Thymus	thymus
32	chr2:178284600-178294000	Weak transcription	HSMM	muscle
33	chr2:178284600-178294400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr2:178284600-178295800	Weak transcription	Colon Smooth Muscle	Colon
35	chr2:178284800-178291000	Weak transcription	Brain Angular Gyrus	brain
36	chr2:178284800-178294200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr2:178284800-178294400	Weak transcription	Liver	Liver
38	chr2:178285000-178289800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr2:178285000-178291600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr2:178285000-178294000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr2:178285400-178289000	Strong transcription	Primary hematopoietic stem cells	blood
42	chr2:178285400-178289000	Strong transcription	Dnd41	blood
43	chr2:178285600-178288600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr2:178285600-178289600	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr2:178285600-178294200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr2:178285800-178291600	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr2:178285800-178294200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr2:178285800-178294400	Weak transcription	Placenta	Placenta
49	chr2:178285800-178294800	Weak transcription	Esophagus	oesophagus
50	chr2:178286000-178288800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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