Variant report

Variant	rs560531940
Chromosome Location	chr4:158727095-158727096
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018387	chr4:157959931-158764190	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1025064	chr4:158719316-158898333	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1808904	chr4:158727016-158731374	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2760875	chr4:158727028-158744592	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:158724600-158727600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:158724800-158734400	Weak transcription	Aorta	Aorta
3	chr4:158725400-158727200	Enhancers	Duodenum Smooth Muscle	Duodenum
4	chr4:158725400-158727200	Enhancers	Stomach Smooth Muscle	stomach
5	chr4:158725600-158731000	Weak transcription	Fetal Intestine Small	intestine
6	chr4:158725800-158727200	Enhancers	HepG2	liver
7	chr4:158725800-158731200	Weak transcription	Liver	Liver
8	chr4:158726200-158728000	Enhancers	Rectal Smooth Muscle	rectum
9	chr4:158726600-158727200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr4:158726800-158727200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:158726800-158727600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr4:158726800-158727600	Enhancers	Fetal Brain Female	brain
13	chr4:158726800-158727800	Enhancers	Brain Germinal Matrix	brain
14	chr4:158727000-158731000	Weak transcription	Fetal Intestine Large	intestine
15	chr4:158727000-158731400	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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