Variant report

Variant	rs560535307
Chromosome Location	chr15:50796941-50796942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:50790299..50792731-chr15:50795242..50797237,2	MCF-7	breast:
2	chr15:50646420..50649209-chr15:50796093..50799049,3	MCF-7	breast:
3	chr15:50796401..50797258-chr18:671842..672405,2	NB4	blood:
4	chr15:50649293..50650992-chr15:50796880..50798462,2	K562	blood:

Variant related genes	Relation type
ENSG00000244879	Chromatin interaction
ENSG00000138592	Chromatin interaction
ENSG00000259298	Chromatin interaction
ENSG00000104064	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045456	chr15:50592472-51019873	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
2	nsv948579	chr15:50645530-51045564	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv524613	chr15:50656449-50868779	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1040717	chr15:50715572-50846521	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1053966	chr15:50715572-51133186	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
6	nsv542383	chr15:50715572-51133186	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
7	nsv1043805	chr15:50715572-51208891	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
8	nsv542384	chr15:50715572-51208891	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
9	nsv1049576	chr15:50744781-50843495	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
11	nsv1051990	chr15:50745814-51133186	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
12	nsv1054970	chr15:50761410-51036625	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
13	nsv457134	chr15:50770868-51184583	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
14	nsv471242	chr15:50770868-51184583	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
15	nsv569396	chr15:50770868-51184583	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
16	nsv457135	chr15:50770868-51189707	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
17	nsv569397	chr15:50770868-51189707	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
18	nsv1048621	chr15:50775451-51115535	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
19	nsv1047039	chr15:50782070-51187804	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
20	nsv542385	chr15:50782070-51187804	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
21	nsv457136	chr15:50789125-51294995	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
22	nsv569398	chr15:50789125-51294995	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
23	nsv431389	chr15:50795835-50979738	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50741800-50797000	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr15:50754400-50797000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr15:50768400-50797000	Strong transcription	Duodenum Mucosa	Duodenum
4	chr15:50768400-50797000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr15:50774200-50797600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr15:50785800-50797000	Weak transcription	Right Ventricle	heart
7	chr15:50785800-50798400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:50786000-50798000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:50786200-50797000	Weak transcription	Pancreas	Pancrea
10	chr15:50786200-50797200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:50786200-50797200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:50786200-50797200	Weak transcription	Esophagus	oesophagus
13	chr15:50786200-50810000	Weak transcription	Psoas Muscle	Psoas
14	chr15:50786400-50797400	Weak transcription	Fetal Heart	heart
15	chr15:50786400-50798400	Weak transcription	Gastric	stomach
16	chr15:50789600-50798200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:50789600-50798200	Weak transcription	Aorta	Aorta
18	chr15:50789600-50798200	Weak transcription	HepG2	liver
19	chr15:50791400-50798000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr15:50791400-50805400	Weak transcription	Small Intestine	intestine
21	chr15:50791800-50797400	Weak transcription	HUVEC	blood vessel
22	chr15:50791800-50798200	Weak transcription	Brain Angular Gyrus	brain
23	chr15:50792000-50797400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr15:50792400-50797000	Strong transcription	Fetal Muscle Leg	muscle
25	chr15:50792400-50797200	Weak transcription	Colonic Mucosa	Colon
26	chr15:50792400-50798000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr15:50792600-50797000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr15:50793000-50797200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr15:50793000-50797200	Weak transcription	HSMMtube	muscle
30	chr15:50793000-50798000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr15:50793000-50798200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr15:50793200-50797200	Weak transcription	Colon Smooth Muscle	Colon
33	chr15:50793200-50798000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr15:50793200-50798000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr15:50793200-50798000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr15:50793200-50798000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr15:50793200-50798200	Weak transcription	Brain Anterior Caudate	brain
38	chr15:50793200-50799800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr15:50793200-50804400	Weak transcription	Primary hematopoietic stem cells	blood
40	chr15:50793400-50797000	Strong transcription	Fetal Stomach	stomach
41	chr15:50793400-50805200	Weak transcription	Brain Hippocampus Middle	brain
42	chr15:50793600-50797200	Weak transcription	Brain Substantia Nigra	brain
43	chr15:50793800-50797400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr15:50793800-50797400	Weak transcription	Osteobl	bone
45	chr15:50793800-50798200	Weak transcription	Fetal Kidney	kidney
46	chr15:50794000-50797200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr15:50794000-50797400	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr15:50794000-50797400	Weak transcription	Dnd41	blood
49	chr15:50794000-50797600	Weak transcription	NHEK	skin
50	chr15:50794000-50798000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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