Variant report

Variant	rs56054225
Chromosome Location	chr14:105190061-105190062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:335)
CpG islands
(count:0)
Chromatin interactive
region (count:28)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:335 , 50 per page) page: 1 2 3 4 5 6 7

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:105189903-105190239	GM13977	blood:	n/a	n/a
2	POLR2A	chr14:105190027-105190473	Hela-S3	cervix:	n/a	n/a
3	CTCF	chr14:105189151-105192219	SK-N-SH	brain:	n/a	chr14:105192055-105192064 chr14:105191543-105191559 chr14:105191864-105191877 chr14:105192053-105192069 chr14:105189634-105189643
4	CTCF	chr14:105190005-105190172	Gliobla	brain:	n/a	n/a
5	JUN	chr14:105189929-105190360	K562	blood:	n/a	chr14:105190106-105190115
6	CTCF	chr14:105189920-105190212	MCF-7	breast:	n/a	n/a
7	ETS1	chr14:105189944-105190198	A549	lung:	n/a	n/a
8	ATF3	chr14:105189863-105190520	A549	lung:	n/a	chr14:105190154-105190168 chr14:105190434-105190443
9	HCFC1	chr14:105190041-105190251	K562	blood:	n/a	n/a
10	FOXM1	chr14:105189830-105190189	GM12878	blood:	n/a	n/a
11	CTCF	chr14:105190000-105190150	GM12865	blood:	n/a	n/a
12	HMGN3	chr14:105189902-105190805	K562	blood:	n/a	n/a
13	CTCF	chr14:105189980-105190130	HCT-116	colon:	n/a	n/a
14	CTCF	chr14:105189980-105190130	HBMEC	blood vessel:	n/a	n/a
15	PAX5	chr14:105189969-105190300	GM12878	blood:	n/a	n/a
16	CTCF	chr14:105189870-105190395	K562	blood:	n/a	n/a
17	CTCF	chr14:105189911-105190432	GM19240	blood:	n/a	n/a
18	CTCF	chr14:105189900-105190420	K562	blood:	n/a	n/a
19	CTCF	chr14:105189929-105190231	K562	blood:	n/a	n/a
20	RCOR1	chr14:105189926-105190789	Hela-S3	cervix:	n/a	n/a
21	RCOR1	chr14:105189882-105190281	HepG2	liver:	n/a	n/a
22	CHD2	chr14:105189997-105190238	GM12878	blood:	n/a	n/a
23	CTCF	chr14:105189980-105190130	MCF-7	breast:	n/a	n/a
24	CTCF	chr14:105190040-105190190	GM12801	blood:	n/a	n/a
25	POLR2A	chr14:105189935-105190430	U87	brain:	n/a	n/a
26	SP4	chr14:105189875-105190267	H1-hESC	embryonic stem cell:	n/a	n/a
27	CTCF	chr14:105190020-105190170	WI-38	lung:	n/a	n/a
28	ZBTB7A	chr14:105189913-105190510	ECC-1	luminal epithelium:	n/a	n/a
29	CTCF	chr14:105189960-105190110	HA-sp	spinal cord:	n/a	n/a
30	CTCF	chr14:105190000-105190150	HRE	kidney:	n/a	n/a
31	CTCF	chr14:105190020-105190170	GM06990	blood:	n/a	n/a
32	CTCF	chr14:105189902-105190195	Lung_OC	lung:	n/a	n/a
33	PBX3	chr14:105189745-105192194	A549	lung:	n/a	chr14:105191712-105191732
34	ELF1	chr14:105189750-105190462	A549	lung:	n/a	n/a
35	CCNT2	chr14:105189822-105190826	K562	blood:	n/a	chr14:105190434-105190443
36	YY1	chr14:105189880-105190380	GM12892	blood:	n/a	chr14:105189970-105189984
37	CTCF	chr14:105189931-105190231	LNCaP	prostate:	n/a	n/a
38	CTCF	chr14:105189960-105190110	HAc	cerebellar:	n/a	n/a
39	ELF1	chr14:105189930-105192118	MCF-7	breast:	n/a	chr14:105190555-105190567 chr14:105190548-105190560 chr14:105190557-105190566 chr14:105190554-105190563
40	POLR2A	chr14:105189541-105190635	U87	brain:	n/a	n/a
41	POLR2A	chr14:105189310-105190475	Hela-S3	cervix:	n/a	n/a
42	STAT5A	chr14:105189550-105190074	GM12878	blood:	n/a	chr14:105189679-105189691
43	MYBL2	chr14:105189821-105190356	HepG2	liver:	n/a	n/a
44	POLR2A	chr14:105189732-105192379	HepG2	liver:	n/a	n/a
45	CTCF	chr14:105189904-105190213	A549	lung:	n/a	n/a
46	E2F6	chr14:105189965-105190170	K562	blood:	n/a	n/a
47	HCFC1	chr14:105189841-105192116	Hela-S3	cervix:	n/a	n/a
48	YY1	chr14:105189874-105190927	HepG2	liver:	n/a	chr14:105190843-105190854 chr14:105190802-105190816 chr14:105190560-105190569 chr14:105190434-105190443 chr14:105189970-105189984 chr14:105190548-105190562 chr14:105190554-105190568 chr14:105190557-105190566 chr14:105190555-105190569
49	CTCF	chr14:105190000-105190150	HMEC	breast:	n/a	n/a
50	NR2F2	chr14:105189759-105190710	MCF-7	breast:	n/a	n/a

No data

(count:28 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:104602797..104606014-chr14:105189341..105192191,3	MCF-7	breast:
2	chr14:105170434..105179131-chr14:105186609..105192895,13	MCF-7	breast:
3	chr14:105143883..105145755-chr14:105189229..105191297,2	K562	blood:
4	chr14:105121801..105124633-chr14:105189159..105191874,3	K562	blood:
5	chr14:105151001..105161366-chr14:105187722..105194013,19	MCF-7	breast:
6	chr14:105153035..105158169-chr14:105187509..105192673,15	MCF-7	breast:
7	chr14:105172288..105174889-chr14:105188137..105190993,3	K562	blood:
8	chr14:105129231..105132198-chr14:105189774..105192921,3	MCF-7	breast:
9	chr14:105189572..105190493-chr14:105286761..105287322,3	MCF-7	breast:
10	chr14:105177252..105180755-chr14:105187832..105191041,3	K562	blood:
11	chr14:105188879..105190553-chr14:105260910..105263562,2	MCF-7	breast:
12	chr14:105188904..105192093-chr14:105240193..105242599,4	MCF-7	breast:
13	chr14:105189265..105192416-chr14:105206500..105210757,4	MCF-7	breast:
14	chr14:105143237..105145709-chr14:105189737..105191924,2	MCF-7	breast:
15	chr14:105172929..105176170-chr14:105188137..105191638,3	K562	blood:
16	chr14:105189604..105190478-chr14:105234537..105235342,2	MCF-7	breast:
17	chr14:105189491..105192321-chr14:105330355..105333549,3	MCF-7	breast:
18	chr14:105189587..105192281-chr14:105330727..105332921,2	MCF-7	breast:
19	chr14:105116390..105117242-chr14:105189517..105190401,3	MCF-7	breast:
20	chr14:105189251..105191715-chr14:105260176..105263336,3	MCF-7	breast:
21	chr14:105182032..105184440-chr14:105189275..105192255,3	MCF-7	breast:
22	chr14:105188668..105192164-chr14:105264427..105268088,6	MCF-7	breast:
23	chr14:105189516..105190121-chr14:105215377..105216349,3	MCF-7	breast:
24	chr14:105189864..105192391-chr14:105285849..105287579,2	MCF-7	breast:
25	chr14:105176257..105179644-chr14:105187832..105191763,3	K562	blood:
26	chr14:105154344..105156028-chr14:105189973..105192295,2	K562	blood:
27	chr14:105189639..105191418-chr14:105219308..105221169,2	MCF-7	breast:
28	chr14:105188315..105194275-chr14:105263600..105268559,9	MCF-7	breast:

No data

Variant related genes	Relation type
ADSSL1	TF binding region
ENSG00000258701	Chromatin interaction
ENSG00000184990	Chromatin interaction
ENSG00000099814	Chromatin interaction
ENSG00000260792	Chromatin interaction
ENSG00000066735	Chromatin interaction
ENSG00000258858	Chromatin interaction
ENSG00000258736	Chromatin interaction
ENSG00000179627	Chromatin interaction
ENSG00000258748	Chromatin interaction
ENSG00000185100	Chromatin interaction
ENSG00000142208	Chromatin interaction
ENSG00000203485	Chromatin interaction
ENSG00000265291	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1128866	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11844508	0.85[ASN][1000 genomes]
rs11850889	0.85[ASN][1000 genomes]
rs12885343	0.85[ASN][1000 genomes]
rs12885496	0.85[ASN][1000 genomes]
rs12894569	0.85[ASN][1000 genomes]
rs34642994	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34877077	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35455320	0.85[ASN][1000 genomes]
rs35590716	0.85[ASN][1000 genomes]
rs4983542	0.85[ASN][1000 genomes]
rs72715966	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72715968	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:66 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530812	chr14:104775571-105364883	Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv902372	chr14:105011436-105200377	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv1053591	chr14:105024558-105475931	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
4	nsv542224	chr14:105024558-105475931	Bivalent Enhancer Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
5	esv2830002	chr14:105078251-105348552	Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
6	nsv902378	chr14:105086475-105200377	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	nsv902379	chr14:105086475-105274093	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
8	nsv902383	chr14:105092479-105200377	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	nsv902384	chr14:105092479-105208567	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
10	nsv902385	chr14:105092479-105215351	Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
11	nsv902386	chr14:105092479-105233095	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
12	nsv902387	chr14:105092479-105274093	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
13	nsv902388	chr14:105092479-105311249	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
14	nsv902389	chr14:105092479-105366499	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
15	esv1828345	chr14:105100787-105803170	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
16	nsv902392	chr14:105105769-105274093	Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
17	nsv902393	chr14:105116232-105200377	Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
18	nsv902394	chr14:105116232-105274093	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
19	nsv902395	chr14:105119897-105215351	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
20	nsv902396	chr14:105119897-105274093	Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
21	nsv456447	chr14:105126354-105200377	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
22	nsv566050	chr14:105126354-105200377	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
23	nsv456448	chr14:105126354-105208567	Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
24	nsv566051	chr14:105126354-105208567	Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
25	nsv470678	chr14:105126354-105246686	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
26	nsv566052	chr14:105126354-105268228	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
27	nsv470677	chr14:105126354-105348552	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
28	nsv542225	chr14:105133688-105803170	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
29	nsv566053	chr14:105139894-105268228	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
30	nsv902397	chr14:105139894-105268228	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
31	nsv456449	chr14:105146579-105200377	ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
32	nsv566054	chr14:105146579-105200377	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
33	nsv456450	chr14:105146579-105208567	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
34	nsv566055	chr14:105146579-105208567	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
35	nsv456451	chr14:105146579-105215351	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
36	nsv566056	chr14:105146579-105215351	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
37	nsv902398	chr14:105146579-105215351	Enhancers Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
38	nsv517038	chr14:105146579-105311249	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
39	nsv566057	chr14:105146579-105311249	Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
40	nsv902400	chr14:105148655-105200006	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
41	nsv902399	chr14:105148655-105200377	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
42	nsv902401	chr14:105148655-105208567	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
43	nsv902402	chr14:105148655-105215351	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
44	nsv566058	chr14:105148655-105233095	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
45	nsv902403	chr14:105148655-105233095	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
46	nsv820230	chr14:105148655-105246686	ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
47	nsv566059	chr14:105148655-105268228	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
48	nsv566060	chr14:105148655-105311249	Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
49	nsv902404	chr14:105148655-105311249	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
50	nsv902405	chr14:105148655-105340643	Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs56054225	SIVA1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105188000-105190400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
2	chr14:105188200-105190400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
3	chr14:105188200-105190400	Enhancers	Stomach Mucosa	stomach
4	chr14:105188600-105190200	Weak transcription	Aorta	Aorta
5	chr14:105189000-105190200	Weak transcription	NHDF-Ad	bronchial
6	chr14:105189000-105190400	Enhancers	Fetal Heart	heart
7	chr14:105189200-105190200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr14:105189600-105190400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:105189600-105190400	Flanking Active TSS	Fetal Muscle Trunk	muscle
10	chr14:105189600-105191200	Active TSS	Rectal Smooth Muscle	rectum
11	chr14:105189800-105190200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr14:105189800-105190200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
13	chr14:105189800-105190200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr14:105189800-105190200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:105189800-105190200	Flanking Active TSS	Brain Hippocampus Middle	brain
16	chr14:105189800-105190200	Flanking Active TSS	Stomach Smooth Muscle	stomach
17	chr14:105189800-105190400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:105189800-105190400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
19	chr14:105189800-105190400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
20	chr14:105189800-105190400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
21	chr14:105189800-105190400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr14:105189800-105190400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr14:105189800-105190400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr14:105189800-105190400	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr14:105189800-105190400	Flanking Active TSS	Colonic Mucosa	Colon
26	chr14:105189800-105190400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
27	chr14:105189800-105190400	Flanking Active TSS	Spleen	Spleen
28	chr14:105189800-105190800	Active TSS	Colon Smooth Muscle	Colon
29	chr14:105189800-105191000	Active TSS	A549	lung
30	chr14:105189800-105191000	Active TSS	HSMMtube	muscle
31	chr14:105189800-105191200	Flanking Active TSS	Dnd41	blood
32	chr14:105189800-105191200	Active TSS	K562	blood
33	chr14:105189800-105191400	Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr14:105189800-105191400	Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr14:105189800-105191400	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr14:105189800-105191400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr14:105189800-105191800	Active TSS	H9 Cell Line	embryonic stem cell
38	chr14:105189800-105191800	Bivalent Enhancer	Fetal Brain Male	brain
39	chr14:105189800-105192000	Active TSS	ES-I3 Cell Line	embryonic stem cell
40	chr14:105189800-105192000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
41	chr14:105189800-105192000	Active TSS	iPS-15b Cell Line	embryonic stem cell
42	chr14:105190000-105190200	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr14:105190000-105190200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr14:105190000-105190200	Flanking Active TSS	Primary B cells from cord blood	blood
45	chr14:105190000-105190200	Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr14:105190000-105190200	Flanking Active TSS	Brain Anterior Caudate	brain
47	chr14:105190000-105190200	Flanking Active TSS	Brain Substantia Nigra	brain
48	chr14:105190000-105190200	Active TSS	Duodenum Mucosa	Duodenum
49	chr14:105190000-105190200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
50	chr14:105190000-105190200	Active TSS	Fetal Thymus	thymus

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