Variant report

Variant	rs560543638
Chromosome Location	chr18:13261551-13261552
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909408	chr18:13122618-13308950	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv909410	chr18:13151544-13308950	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3372035	chr18:13260052-13264450	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3448583	chr18:13261252-13264050	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3405323	chr18:13261252-13267450	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13243600-13278200	Weak transcription	Dnd41	blood
2	chr18:13253000-13267800	Weak transcription	Gastric	stomach
3	chr18:13256200-13262400	Enhancers	Brain Anterior Caudate	brain
4	chr18:13256800-13268400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr18:13258600-13262200	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr18:13258600-13262400	Enhancers	Fetal Heart	heart
7	chr18:13258600-13268600	Enhancers	Right Ventricle	heart
8	chr18:13258800-13261800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr18:13258800-13262000	Enhancers	Brain Cingulate Gyrus	brain
10	chr18:13258800-13262000	Enhancers	Fetal Muscle Leg	muscle
11	chr18:13258800-13262200	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr18:13258800-13262200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr18:13258800-13262200	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr18:13258800-13262200	Enhancers	Left Ventricle	heart
15	chr18:13258800-13262400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr18:13258800-13262400	Enhancers	Colon Smooth Muscle	Colon
17	chr18:13258800-13262400	Enhancers	Fetal Lung	lung
18	chr18:13258800-13262400	Enhancers	Placenta	Placenta
19	chr18:13258800-13262400	Enhancers	Spleen	Spleen
20	chr18:13258800-13262400	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr18:13259000-13261600	Genic enhancers	Thymus	Thymus
22	chr18:13259000-13261800	Enhancers	Primary T cells from cord blood	blood
23	chr18:13259000-13262000	Enhancers	Fetal Stomach	stomach
24	chr18:13259000-13262200	Enhancers	Brain Hippocampus Middle	brain
25	chr18:13259000-13262200	Enhancers	Right Atrium	heart
26	chr18:13259200-13262000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr18:13259200-13262600	Enhancers	Lung	lung
28	chr18:13259200-13280000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr18:13259400-13261800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr18:13259600-13262200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr18:13259800-13261600	Enhancers	Brain Germinal Matrix	brain
32	chr18:13259800-13262000	Enhancers	Primary T cells fromperipheralblood	blood
33	chr18:13259800-13262200	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr18:13259800-13262200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr18:13259800-13262400	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr18:13259800-13262400	Enhancers	Primary hematopoietic stem cells	blood
37	chr18:13259800-13262400	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr18:13259800-13262400	Enhancers	Brain Substantia Nigra	brain
39	chr18:13259800-13262400	Enhancers	Esophagus	oesophagus
40	chr18:13259800-13262400	Enhancers	Fetal Muscle Trunk	muscle
41	chr18:13259800-13267800	Enhancers	Fetal Brain Male	brain
42	chr18:13260000-13262200	Enhancers	Brain Angular Gyrus	brain
43	chr18:13260000-13262400	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr18:13260000-13263800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr18:13260000-13266200	Enhancers	Rectal Smooth Muscle	rectum
46	chr18:13260200-13261600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr18:13260200-13262200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr18:13260200-13262200	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr18:13260200-13262200	Enhancers	Aorta	Aorta
50	chr18:13260200-13262200	Flanking Active TSS	Stomach Smooth Muscle	stomach

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