Variant report

Variant	rs560549051
Chromosome Location	chr11:58394604-58394605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:58386568..58389944-chr11:58391542..58395484,7	K562	blood:
2	chr11:58390174..58392645-chr11:58393294..58395945,2	K562	blood:
3	chr11:58376475..58380283-chr11:58392724..58395037,3	K562	blood:

Variant related genes	Relation type
ENSG00000269570	Chromatin interaction
ENSG00000255073	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832168	chr11:58394060-58564651	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58376600-58395800	Strong transcription	Fetal Thymus	thymus
2	chr11:58376600-58396200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:58376800-58395200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr11:58376800-58395600	Strong transcription	Dnd41	blood
5	chr11:58377200-58394800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:58377200-58394800	Strong transcription	Fetal Muscle Trunk	muscle
7	chr11:58377200-58397200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:58377400-58394800	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr11:58377400-58394800	Strong transcription	Duodenum Mucosa	Duodenum
10	chr11:58377400-58395200	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr11:58377600-58395200	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr11:58381400-58395000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:58385200-58397000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:58385600-58400400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:58386800-58400000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr11:58388600-58395200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr11:58390000-58395200	Strong transcription	GM12878-XiMat	blood
18	chr11:58391800-58397400	Genic enhancers	HSMM	muscle
19	chr11:58392000-58394800	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:58392000-58396000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:58392000-58397000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:58392000-58406000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:58392200-58394800	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:58392200-58394800	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr11:58392200-58394800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr11:58392200-58397600	Weak transcription	Esophagus	oesophagus
27	chr11:58392200-58399200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr11:58392200-58400800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr11:58392400-58395400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr11:58392400-58397200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr11:58392400-58402000	Weak transcription	Fetal Intestine Small	intestine
32	chr11:58392600-58394800	Weak transcription	Fetal Lung	lung
33	chr11:58392600-58394800	Genic enhancers	NHEK	skin
34	chr11:58392600-58400600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr11:58392800-58395000	Weak transcription	Brain Angular Gyrus	brain
36	chr11:58392800-58395000	Weak transcription	Brain Anterior Caudate	brain
37	chr11:58392800-58395000	Weak transcription	Brain Cingulate Gyrus	brain
38	chr11:58392800-58395000	Weak transcription	Colon Smooth Muscle	Colon
39	chr11:58392800-58395400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:58392800-58395400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:58392800-58396000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr11:58392800-58396600	Weak transcription	Fetal Brain Male	brain
43	chr11:58392800-58397600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr11:58392800-58399400	Weak transcription	Lung	lung
45	chr11:58393000-58394800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:58393000-58394800	Enhancers	Psoas Muscle	Psoas
47	chr11:58393000-58396000	Enhancers	NHLF	lung
48	chr11:58393000-58397400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr11:58393000-58397600	Weak transcription	Spleen	Spleen
50	chr11:58393000-58398600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links