Variant report

Variant	rs56055702
Chromosome Location	chr9:98367443-98367444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10115671	0.83[AMR][1000 genomes]
rs10119489	0.83[AMR][1000 genomes]
rs10121686	0.83[AMR][1000 genomes]
rs28562196	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv430083	chr9:98204245-98445645	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1041997	chr9:98322355-98442175	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv540176	chr9:98322355-98442175	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98360400-98368600	Weak transcription	Spleen	Spleen
2	chr9:98364800-98367600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr9:98364800-98371600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:98366800-98370000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:98367000-98368200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:98367000-98370000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:98367200-98368000	Enhancers	Esophagus	oesophagus
8	chr9:98367200-98368200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr9:98367200-98368200	Enhancers	Fetal Muscle Trunk	muscle
10	chr9:98367200-98368400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:98367200-98368400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:98367200-98368800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:98367200-98369000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:98367200-98369600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr9:98367200-98370600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:98367400-98367800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr9:98367400-98368400	Enhancers	Colon Smooth Muscle	Colon
18	chr9:98367400-98368600	Enhancers	Placenta Amnion	Placenta Amnion

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links