Variant report
| Variant | rs560558089 |
|---|---|
| Chromosome Location | chr10:37635790-37635791 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ANKRD30A-2 | chr10:37635695-37635933 | NONHSAT012772 |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1045454 | chr10:37512369-37678936 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | esv2750892 | chr10:37525594-37733381 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv971877 | chr10:37615294-37637158 | Inactive region | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv3441992 | chr10:37624992-37659509 | ZNF genes & repeats | TF binding regionCpG islandlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv3321462 | chr10:37625633-37660312 | ZNF genes & repeats | TF binding regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | esv3321473 | chr10:37625633-37660312 | ZNF genes & repeats | TF binding regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
