Variant report

Variant rs560584419
Chromosome Location chr6:11786535-11786536
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:34 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:11774000-11791600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr6:11779800-11787800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr6:11785200-11787400 Enhancers Stomach Mucosa stomach
4 chr6:11785600-11787000 Flanking Active TSS GM12878-XiMat blood
5 chr6:11785800-11786600 Active TSS Colonic Mucosa Colon
6 chr6:11785800-11786800 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
7 chr6:11785800-11786800 Flanking Active TSS Rectal Mucosa Donor 31 rectum
8 chr6:11786000-11786600 Active TSS Primary T helper memory cells from peripheral blood 1 blood
9 chr6:11786000-11786600 Enhancers Gastric stomach
10 chr6:11786000-11786800 Flanking Active TSS Primary T cells fromperipheralblood blood
11 chr6:11786000-11786800 Active TSS Primary T helper naive cells from peripheral blood blood
12 chr6:11786000-11786800 Flanking Active TSS Fetal Intestine Large intestine
13 chr6:11786000-11786800 Flanking Active TSS Fetal Intestine Small intestine
14 chr6:11786000-11786800 Enhancers Pancreas Pancrea
15 chr6:11786000-11787000 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
16 chr6:11786000-11787400 Enhancers Primary T cells from cord blood blood
17 chr6:11786000-11791400 Weak transcription NHEK skin
18 chr6:11786200-11786600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
19 chr6:11786200-11786600 Active TSS Primary T helper memory cells from peripheral blood 2 blood
20 chr6:11786200-11786600 Active TSS Primary T helper cells PMA-I stimulated --
21 chr6:11786200-11786600 Active TSS Primary T helper cells fromperipheralblood blood
22 chr6:11786200-11786800 Active TSS Rectal Smooth Muscle rectum
23 chr6:11786200-11786800 Enhancers Sigmoid Colon Sigmoid Colon
24 chr6:11786200-11788600 Enhancers Fetal Thymus thymus
25 chr6:11786200-11790600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr6:11786200-11790800 Weak transcription HMEC breast
27 chr6:11786400-11786600 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
28 chr6:11786400-11786600 Active TSS Primary T regulatory cells fromperipheralblood blood
29 chr6:11786400-11786600 Bivalent Enhancer Foreskin Fibroblast Primary Cells skin01 Skin
30 chr6:11786400-11786800 Bivalent Enhancer Primary B cells from peripheral blood blood
31 chr6:11786400-11786800 Flanking Active TSS Duodenum Mucosa Duodenum
32 chr6:11786400-11786800 Enhancers K562 blood
33 chr6:11786400-11787000 Active TSS Rectal Mucosa Donor 29 rectum
34 chr6:11786400-11787800 Enhancers Dnd41 blood

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