Variant report

Variant	rs56058910
Chromosome Location	chr15:73126038-73126039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12594060	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1284048	0.84[ASN][1000 genomes]
rs12914505	0.85[ASN][1000 genomes]
rs1593508	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1974970	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2053854	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167031	0.96[EUR][1000 genomes]
rs2415168	0.85[ASN][1000 genomes]
rs4514651	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62017630	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs998549	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73114400-73127200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:73118000-73129200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:73125000-73128400	Enhancers	Fetal Intestine Small	intestine
4	chr15:73125000-73128600	Enhancers	Fetal Intestine Large	intestine
5	chr15:73125400-73130600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr15:73126000-73132800	Enhancers	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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