Variant report

Variant	rs56060119
Chromosome Location	chr13:87013596-87013597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1114392	0.86[AMR][1000 genomes]
rs1159197	0.83[AMR][1000 genomes]
rs1585309	0.83[AMR][1000 genomes]
rs28669170	0.90[AMR][1000 genomes]
rs4142819	0.86[AMR][1000 genomes]
rs61963664	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7337268	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9284287	0.89[AMR][1000 genomes]
rs9513163	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9513261	0.85[AMR][1000 genomes]
rs9513262	0.86[AMR][1000 genomes]
rs9516460	0.83[AMR][1000 genomes]
rs9524590	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047136	chr13:86979109-87555131	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2763045	chr13:87005617-87079364	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87009600-87014000	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr13:87009600-87014400	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr13:87010200-87015600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr13:87011600-87015400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr13:87012400-87017800	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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