Variant report

Variant rs560615105
Chromosome Location chr2:54758592-54758593
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54740400-54770200 Weak transcription Esophagus oesophagus
2 chr2:54740600-54761800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr2:54744000-54777600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr2:54744400-54769600 Weak transcription Spleen Spleen
5 chr2:54747000-54760600 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr2:54747200-54761800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr2:54747200-54769800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
8 chr2:54748400-54768000 Weak transcription iPS-20b Cell Line embryonic stem cell
9 chr2:54748400-54776800 Weak transcription Pancreas Pancrea
10 chr2:54750800-54759200 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr2:54750800-54769800 Weak transcription HUES48 Cell Line embryonic stem cell
12 chr2:54751000-54759400 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr2:54751000-54759600 Weak transcription Rectal Mucosa Donor 31 rectum
14 chr2:54751000-54760200 Weak transcription Rectal Smooth Muscle rectum
15 chr2:54752000-54760200 Weak transcription Colonic Mucosa Colon
16 chr2:54752000-54764600 Weak transcription Gastric stomach
17 chr2:54752200-54759600 Weak transcription Small Intestine intestine
18 chr2:54752200-54767600 Weak transcription ES-I3 Cell Line embryonic stem cell
19 chr2:54752200-54777800 Weak transcription H9 Cell Line embryonic stem cell
20 chr2:54752400-54759600 Weak transcription Duodenum Mucosa Duodenum
21 chr2:54752600-54758600 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr2:54752600-54759800 Weak transcription GM12878-XiMat blood
23 chr2:54753000-54758800 Strong transcription Fetal Adrenal Gland Adrenal Gland
24 chr2:54753000-54759000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr2:54753200-54759800 Strong transcription Adipose Nuclei Adipose
26 chr2:54753400-54758600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr2:54753400-54758800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
28 chr2:54753600-54758600 Strong transcription Fetal Lung lung
29 chr2:54753800-54764800 Strong transcription Fetal Muscle Trunk muscle
30 chr2:54753800-54768200 Strong transcription Fetal Muscle Leg muscle
31 chr2:54754000-54760200 Weak transcription Colon Smooth Muscle Colon
32 chr2:54754400-54759800 Weak transcription iPS-18 Cell Line embryonic stem cell
33 chr2:54754400-54767800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
34 chr2:54754600-54760000 Weak transcription HUES64 Cell Line embryonic stem cell
35 chr2:54754800-54759000 Strong transcription HSMM muscle
36 chr2:54754800-54767800 Weak transcription Skeletal Muscle Female skeletal muscle
37 chr2:54755000-54758800 Weak transcription Lung lung
38 chr2:54755000-54761000 Weak transcription Right Ventricle heart
39 chr2:54755000-54767600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr2:54755200-54759800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr2:54755400-54758600 Weak transcription Liver Liver
42 chr2:54755400-54762600 Enhancers Placenta Amnion Placenta Amnion
43 chr2:54755600-54758600 Strong transcription Fetal Heart heart
44 chr2:54755600-54761200 Weak transcription Fetal Brain Male brain
45 chr2:54756000-54758600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
46 chr2:54756000-54759400 Strong transcription Fetal Stomach stomach
47 chr2:54756200-54758800 Genic enhancers HepG2 liver
48 chr2:54756400-54759000 Strong transcription Breast Myoepithelial Primary Cells Breast
49 chr2:54756400-54759200 Strong transcription Stomach Smooth Muscle stomach
50 chr2:54756400-54759800 Strong transcription HSMMtube muscle

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