Variant report

Variant	rs56061981
Chromosome Location	chr4:76944785-76944786
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:17)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:17 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr4:76944554-76944811	K562	blood:	n/a	n/a
2	MAX	chr4:76944495-76944840	ECC-1	luminal epithelium:	n/a	n/a
3	NFYB	chr4:76944532-76944818	GM12878	blood:	n/a	chr4:76944706-76944721 chr4:76944709-76944719 chr4:76944707-76944721 chr4:76944706-76944721
4	FOS	chr4:76944592-76944927	MCF10A-Er-Src	breast:	n/a	chr4:76944708-76944717
5	STAT3	chr4:76944661-76944927	MCF10A-Er-Src	breast:	n/a	chr4:76944860-76944871
6	E2F6	chr4:76944565-76944813	K562	blood:	n/a	n/a
7	E2F4	chr4:76944566-76944865	MCF10A-Er-Src	breast:	n/a	n/a
8	RELA	chr4:76944546-76944997	GM19099	blood:	n/a	chr4:76944817-76944826 chr4:76944817-76944826
9	RELA	chr4:76944552-76945000	GM18505	blood:	n/a	chr4:76944817-76944826 chr4:76944817-76944826
10	MYC	chr4:76944651-76944856	MCF10A-Er-Src	breast:	n/a	n/a
11	MAX	chr4:76944492-76944894	ECC-1	luminal epithelium:	n/a	n/a
12	FOS	chr4:76944718-76944973	MCF10A-Er-Src	breast:	n/a	n/a
13	POLR2A	chr4:76944434-76944814	GM12891	blood:	n/a	n/a
14	MAX	chr4:76944484-76944819	K562	blood:	n/a	n/a
15	MYC	chr4:76944655-76944926	MCF10A-Er-Src	breast:	n/a	n/a
16	RELA	chr4:76944500-76944954	GM12891	blood:	n/a	chr4:76944817-76944826 chr4:76944817-76944826
17	E2F6	chr4:76944541-76944846	H1-hESC	embryonic stem cell:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:76944785-76944835	Hepatocyte	liver:	n/a
2	chr4:76944785-76944835	PANC-1	pancreas:	n/a
3	chr4:76944785-76944835	AG10803	skin:	n/a
4	chr4:76944785-76944835	GM12878	blood:	n/a
5	chr4:76944785-76944835	NB4	blood:	n/a
6	chr4:76944785-76944835	RPTEC	kidney:	n/a
7	chr4:76944785-76944835	IMR90	lung:	fetal
8	chr4:76944785-76944835	PFSK-1	brain:	n/a
9	chr4:76944785-76944835	HL-60	blood:	n/a
10	chr4:76944785-76944835	NHDF-neo	bronchial:	n/a
11	chr4:76944785-76944835	HCF	heart:	n/a
12	chr4:76944785-76944835	GM19239	blood:	n/a
13	chr4:76944785-76944835	A549	lung:	n/a
14	chr4:76944785-76944835	HMEC	breast:	n/a
15	chr4:76944785-76944835	U87	brain:	n/a
16	chr4:76944785-76944835	SK-N-SH_RA	brain:	n/a
17	chr4:76944785-76944835	HIPEpiC	eye:	n/a
18	chr4:76944785-76944835	HepG2	liver:	n/a
19	chr4:76944785-76944835	HRE	kidney:	n/a
20	chr4:76944785-76944835	H1-hESC	embryonic stem cell:	embryo
21	chr4:76944785-76944835	LNCaP	prostate:	n/a
22	chr4:76944785-76944835	HEK293	kidney:	embryo
23	chr4:76944785-76944835	MCF-7	breast:	n/a
24	chr4:76944785-76944835	SK-N-SH	brain:	n/a
25	chr4:76944785-76944835	SKMC	muscle:	n/a
26	chr4:76944785-76944835	HCPEpiC	choroid plexus:	n/a
27	chr4:76944785-76944835	GM06990	blood:	n/a
28	chr4:76944785-76944835	CMK	blood:	n/a
29	chr4:76944785-76944835	MCF10A-Er-Src	breast:	n/a
30	chr4:76944785-76944835	NHBE	bronchial:	n/a
31	chr4:76944785-76944835	HPAEpiC	pulmonary alveolar:	n/a
32	chr4:76944785-76944835	HNPCEpiC	eye:	n/a
33	chr4:76944785-76944835	NT2-D1	testis:	n/a
34	chr4:76944785-76944835	BE2_C	brain:	n/a
35	chr4:76944785-76944835	HEEpiC	esophagus:	n/a
36	chr4:76944785-76944835	NH-A	brain:	n/a
37	chr4:76944785-76944835	BJ	skin:	n/a
38	chr4:76944785-76944835	ProgFib	skin:	n/a
39	chr4:76944785-76944835	HUVEC	blood vessel:	n/a
40	chr4:76944785-76944835	GM12892	blood:	n/a
41	chr4:76944785-76944835	AG04450	lung:	fetal
42	chr4:76944785-76944835	K562	blood:	n/a
43	chr4:76944785-76944835	AG09319	gingival:	n/a
44	chr4:76944785-76944835	ovcar-3	ovarian:	n/a
45	chr4:76944785-76944835	Hela-S3	cervix:	n/a
46	chr4:76944785-76944835	SK-N-MC	brain:	n/a
47	chr4:76944785-76944835	HRPEpiC	eye:	n/a
48	chr4:76944785-76944835	HRCEpiC	kidney:	n/a
49	chr4:76944785-76944835	Caco-2	colon:	n/a
50	chr4:76944785-76944835	AG04449	skin:	fetal

No data

Variant related genes	Relation type
CXCL10	TF binding region
CXCL10	CpG island

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs35569453	1.00[EUR][1000 genomes]
rs57430951	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57807567	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58787375	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61545284	0.92[EUR][1000 genomes]
rs72501287	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73825734	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs868007	1.00[EUR][1000 genomes]
rs884005	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1004627	chr4:76793910-76999584	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76943400-76944800	Enhancers	Fetal Lung	lung
2	chr4:76944000-76944800	Enhancers	Duodenum Mucosa	Duodenum
3	chr4:76944200-76944800	Enhancers	Fetal Intestine Small	intestine
4	chr4:76944200-76945000	Enhancers	Primary hematopoietic stem cells	blood
5	chr4:76944200-76945400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr4:76944200-76945800	Enhancers	Primary B cells from peripheral blood	blood
7	chr4:76944400-76945200	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr4:76944400-76945600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr4:76944400-76946200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr4:76944600-76944800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
11	chr4:76944600-76945000	Enhancers	Primary B cells from cord blood	blood
12	chr4:76944600-76945000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr4:76944600-76945000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr4:76944600-76945000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:76944600-76945000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:76944600-76945200	Flanking Active TSS	GM12878-XiMat	blood
17	chr4:76944600-76945200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr4:76944600-76945400	Enhancers	Adipose Nuclei	Adipose
19	chr4:76944600-76945400	Enhancers	Liver	Liver
20	chr4:76944600-76945800	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr4:76944600-76946000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr4:76944600-76946000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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